Assembly
ASM360035v1
BioProject PRJNA491254 · BioSample SAMN10068289
GENOME-RESOLVED EVIDENCE
GCA_003600355.1
Clostridium fermenticellae · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2819963 bp · GC 31.000%
Completeness 98.760% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 5 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCD4Z93_12740 | AYD41324.1 | OG0000061 | CP032416.1:2759464–2760813 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium fermenticellae] |
| ldhD4Z93_01685 | AYD39321.1 | OG0000131 | CP032416.1:327632–328591 - | L-lactate dehydrogenase [Clostridium fermenticellae] |
| accBD4Z93_12750 | AYD41326.1 | OG0000212 | CP032416.1:2761317–2761844 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium fermenticellae] |
| hbdD4Z93_02575 | AYD39481.1 | OG0000229 | CP032416.1:523493–524341 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium fermenticellae] |
| hbdD4Z93_09710 | AYD40786.1 | OG0000229 | CP032416.1:2079245–2080090 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium fermenticellae] |
| thlD4Z93_00915 | AYD39196.1 | OG0000234 | CP032416.1:191401–192579 + | acetyl-CoA C-acetyltransferase [Clostridium fermenticellae] |
| thlD4Z93_06555 | AYD40198.1 | OG0000234 | CP032416.1:1372138–1373313 + | acetyl-CoA C-acetyltransferase [Clostridium fermenticellae] |
| thlD4Z93_11515 | AYD41113.1 | OG0000234 | CP032416.1:2486478–2487656 - | acetyl-CoA C-acetyltransferase [Clostridium fermenticellae] |
| crtD4Z93_02155 | AYD39407.1 | OG0000330 | CP032416.1:428404–429309 + | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase [Clostridium fermenticellae] |
| crtD4Z93_08950 | AYD40650.1 | OG0000330 | CP032416.1:1916726–1917631 - | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase [Clostridium fermenticellae] |
| lctPD4Z93_07490 | AYD40372.1 | OG0001228 | CP032416.1:1604668–1606194 - | L-lactate permease [Clostridium fermenticellae] |
| crtD4Z93_02555 | AYD39477.1 | OG0001394 | CP032416.1:519695–520474 + | short-chain-enoyl-CoA hydratase [Clostridium fermenticellae] |
| crtD4Z93_09715 | AYD40787.1 | OG0001639 | CP032416.1:2080170–2080949 - | short-chain-enoyl-CoA hydratase [Clostridium fermenticellae] |
| crtD4Z93_09705 | AYD40785.1 | OG0003747 | CP032416.1:2078696–2079118 - | enoyl-CoA hydratase [Clostridium fermenticellae] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.