Assembly
ASM360626v1
BioProject PRJNA412368 · BioSample SAMN07710202
GENOME-RESOLVED EVIDENCE
GCA_003606265.1
Clostridium septicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3404718 bp · GC 28.000%
Completeness 98.510% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCP523_01225 | AYE33173.1 | OG0000061 | CP023671.1:275892–277244 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium septicum] |
| ldhCP523_06840 | AYE34196.1 | OG0000131 | CP023671.1:1562355–1563305 - | L-lactate dehydrogenase [Clostridium septicum] |
| ldhCP523_15575 | AYE35740.1 | OG0000131 | CP023671.1:3356890–3357840 - | L-lactate dehydrogenase [Clostridium septicum] |
| hbdCP523_09575 | AYE34653.1 | OG0000229 | CP023671.1:2117887–2118735 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium septicum] |
| thlCP523_10150 | AYE34736.1 | OG0000234 | CP023671.1:2222383–2223564 + | acetyl-CoA C-acetyltransferase [Clostridium septicum] |
| adhECP523_01205 | AYE33169.1 | OG0001124 | CP023671.1:270598–273222 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium septicum] |
| lctPCP523_05850 | AYE34023.1 | OG0001228 | CP023671.1:1323771–1325291 - | lactate permease [Clostridium septicum] |
| crtCP523_09555 | AYE34649.1 | OG0001394 | CP023671.1:2113938–2114720 + | crotonase [Clostridium septicum] |
| crtCP523_05175 | AYE33909.1 | OG0003747 | CP023671.1:1182353–1182769 - | enoyl-CoA hydratase [Clostridium septicum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.