Assembly
ASM361423v1
BioProject PRJNA460203 · BioSample SAMN09062437
GENOME-RESOLVED EVIDENCE
GCA_003614235.1
Clostridium novyi · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2499078 bp · GC 28.000%
Completeness 98.760% · contamination 0.780%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCDFH04_03675 | AYF53906.1 | OG0000061 | CP029458.1:795346–796689 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium novyi] |
| ldhDFH04_06405 | AYF54359.1 | OG0000131 | CP029458.1:1345477–1346439 - | L-lactate dehydrogenase [Clostridium novyi] |
| accBDFH04_03685 | AYF53908.1 | OG0000212 | CP029458.1:797140–797616 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium novyi] |
| hbdDFH04_05015 | AYF54116.1 | OG0000229 | CP029458.1:1052281–1053126 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium novyi] |
| hbdDFH04_05580 | AYF54223.1 | OG0000229 | CP029458.1:1159596–1160444 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium novyi] |
| thlDFH04_05020 | AYF54117.1 | OG0000234 | CP029458.1:1053181–1054359 + | acetyl-CoA C-acetyltransferase [Clostridium novyi] |
| accDDFH04_03670 | AYF53905.1 | OG0000403 | CP029458.1:794442–795302 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium novyi] |
| accADFH04_03665 | AYF53904.1 | OG0000885 | CP029458.1:793464–794408 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium novyi] |
| lctPDFH04_00690 | AYF53356.1 | OG0001228 | CP029458.1:145183–146706 - | L-lactate permease [Clostridium novyi] |
| crtDFH04_05560 | AYF54219.1 | OG0001394 | CP029458.1:1155717–1156502 + | crotonase [Clostridium novyi] |
| crtDFH04_08140 | AYF54674.1 | OG0001394 | CP029458.1:1721994–1722779 + | crotonase [Clostridium novyi] |
| crtDFH04_06530 | AYF54383.1 | OG0015352 | CP029458.1:1377488–1378264 + | enoyl-CoA hydratase [Clostridium novyi] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.