Assembly
ASM400639v2
BioProject PRJNA474267 · BioSample SAMN09296264
GENOME-RESOLVED EVIDENCE
GCA_004006395.2
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4579117 bp · GC 31.000%
Completeness 98.760% · contamination 1.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfC | Rnf complex subunit C | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| rnfCDMR38_19830 | AZV58657.1 | OG0000037 | CP029758.2:4245576–4246904 - | electron transport complex protein RnfC [Clostridium sp. AWRP] |
| accCDMR38_21140 | AZV58885.1 | OG0000061 | CP029758.2:4483600–4484943 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. AWRP] |
| accBDMR38_10480 | AZV56989.1 | OG0000212 | CP029758.2:2263146–2263364 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium sp. AWRP] |
| accBDMR38_21150 | AZV58887.1 | OG0000212 | CP029758.2:4485446–4485973 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. AWRP] |
| crtDMR38_14235 | AZV57675.1 | OG0000330 | CP029758.2:3094023–3094928 - | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase [Clostridium sp. AWRP] |
| fabZDMR38_21145 | AZV58886.1 | OG0000785 | CP029758.2:4484968–4485423 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. AWRP] |
| adhEDMR38_08340 | QCH43721.1 | OG0001124 | CP029758.2:1794547–1797159 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. AWRP] |
| adhEDMR38_08345 | AZV56613.1 | OG0001124 | CP029758.2:1797316–1799955 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. AWRP] |
| lctPDMR38_11145 | AZV57110.1 | OG0001228 | CP029758.2:2416275–2417801 - | L-lactate permease [Clostridium sp. AWRP] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.