Assembly
ASM401518v1
BioProject PRJNA429079 · BioSample SAMN08328878
GENOME-RESOLVED EVIDENCE
GCA_004015185.1
Clostridium manihotivorum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6364326 bp · GC 32.000%
Completeness 99.380% · contamination 5.330%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCC1I91_22520 | QAA34183.1 | OG0000061 | CP025746.1:5007126–5008469 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium manihotivorum] |
| ldhC1I91_20820 | QAA33877.1 | OG0000131 | CP025746.1:4631101–4632054 - | L-lactate dehydrogenase [Clostridium manihotivorum] |
| ldhC1I91_27220 | QAA35038.1 | OG0000131 | CP025746.1:6173865–6174818 - | L-lactate dehydrogenase [Clostridium manihotivorum] |
| accBC1I91_22530 | QAA34185.1 | OG0000212 | CP025746.1:5008931–5009389 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium manihotivorum] |
| hbdC1I91_05425 | QAA31151.1 | OG0000229 | CP025746.1:1227258–1228106 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium manihotivorum] |
| accDC1I91_22515 | QAA34182.1 | OG0000403 | CP025746.1:5006252–5007112 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium manihotivorum] |
| accAC1I91_22510 | QAA34181.1 | OG0000885 | CP025746.1:5005426–5006235 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium manihotivorum] |
| adhEC1I91_09540 | QAA31870.1 | OG0001124 | CP025746.1:2141580–2144213 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium manihotivorum] |
| crtC1I91_05405 | QAA31148.1 | OG0001394 | CP025746.1:1223156–1223938 + | crotonase [Clostridium manihotivorum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.