Assembly
ASM410182v1
BioProject PRJNA508262 · BioSample SAMN10518748
GENOME-RESOLVED EVIDENCE
GCA_004101825.1
Clostridium septicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3454144 bp · GC 28.000%
Completeness 99.380% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCEI377_11725 | QAS61343.1 | OG0000061 | CP034358.1:2460930–2462282 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium septicum] |
| ldhEI377_01315 | QAS59560.1 | OG0000131 | CP034358.1:302610–303560 - | L-lactate dehydrogenase [Clostridium septicum] |
| ldhEI377_10290 | QAS61079.1 | OG0000131 | CP034358.1:2139417–2140367 - | L-lactate dehydrogenase [Clostridium septicum] |
| accBEI377_11735 | QAS61345.1 | OG0000212 | CP034358.1:2462717–2463211 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium septicum] |
| hbdEI377_04320 | QAS60052.1 | OG0000229 | CP034358.1:902730–903578 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium septicum] |
| thlEI377_04950 | QAS60137.1 | OG0000234 | CP034358.1:1023683–1024864 + | acetyl-CoA C-acetyltransferase [Clostridium septicum] |
| fabZEI377_11730 | QAS61344.1 | OG0000785 | CP034358.1:2462292–2462714 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium septicum] |
| adhEEI377_11705 | QAS61339.1 | OG0001124 | CP034358.1:2455636–2458260 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium septicum] |
| lctPEI377_00335 | QAS59395.1 | OG0001228 | CP034358.1:69127–70647 - | L-lactate permease [Clostridium septicum] |
| crtEI377_04300 | QAS60048.1 | OG0001394 | CP034358.1:898781–899563 + | short-chain-enoyl-CoA hydratase [Clostridium septicum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.