Assembly
ASM410369v1
BioProject PRJNA515182 · BioSample SAMN10743636
GENOME-RESOLVED EVIDENCE
GCA_004103695.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3223191 bp · GC 32.500%
Completeness 97.930% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCEQM05_15285 | QAT41507.1 | OG0000061 | CP035280.1:3171708–3173048 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. JN-9] |
| fabZEQM05_09545 | QAT40487.1 | OG0000119 | CP035280.1:1998409–2000124 - | 3-hydroxyacyl-ACP dehydratase [Clostridium sp. JN-9] |
| ldhEQM05_03830 | QAT39446.1 | OG0000131 | CP035280.1:799712–800659 + | L-lactate dehydrogenase [Clostridium sp. JN-9] |
| accBEQM05_15295 | QAT41509.1 | OG0000212 | CP035280.1:3173533–3173994 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. JN-9] |
| hbdEQM05_02945 | QAT39293.1 | OG0000229 | CP035280.1:618715–619563 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. JN-9] |
| hbdEQM05_13535 | QAT41201.1 | OG0000229 | CP035280.1:2809260–2810105 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. JN-9] |
| thlEQM05_01155 | QAT38979.1 | OG0000234 | CP035280.1:232116–233291 + | acetyl-CoA C-acetyltransferase [Clostridium sp. JN-9] |
| thlEQM05_13530 | QAT41200.1 | OG0000234 | CP035280.1:2808067–2809242 - | acetyl-CoA C-acetyltransferase [Clostridium sp. JN-9] |
| fabZEQM05_15290 | QAT41508.1 | OG0000785 | CP035280.1:3173078–3173515 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. JN-9] |
| lctPEQM05_06370 | QAT39900.1 | OG0001228 | CP035280.1:1334115–1335623 + | L-lactate permease [Clostridium sp. JN-9] |
| crtEQM05_02925 | QAT39289.1 | OG0001394 | CP035280.1:614906–615688 + | short-chain-enoyl-CoA hydratase [Clostridium sp. JN-9] |
| crtEQM05_13540 | QAT41202.1 | OG0001639 | CP035280.1:2810129–2810908 - | short-chain-enoyl-CoA hydratase [Clostridium sp. JN-9] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.