Assembly
ASM432888v1
BioProject PRJNA436337 · BioSample SAMN08623026
GENOME-RESOLVED EVIDENCE
GCA_004328885.1
Clostridium chauvoei · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2883701 bp · GC 28.500%
Completeness 98.760% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfC | Rnf complex subunit C | 2 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| rnfCC6H62_06560 | QBJ75346.1 | OG0000037 | CP027286.1:1418132–1419463 + | electron transport complex protein RnfC [Clostridium chauvoei] |
| rnfCC6H62_10250 | QBJ76036.1 | OG0000037 | CP027286.1:2194426–2195754 - | electron transport complex protein RnfC [Clostridium chauvoei] |
| accCC6H62_05530 | QBJ75148.1 | OG0000061 | CP027286.1:1188152–1189504 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium chauvoei] |
| ldhC6H62_07010 | QBJ75430.1 | OG0000131 | CP027286.1:1507921–1508871 + | L-lactate dehydrogenase [Clostridium chauvoei] |
| ldhC6H62_12785 | QBJ76458.1 | OG0000131 | CP027286.1:2754633–2755583 - | L-lactate dehydrogenase [Clostridium chauvoei] |
| accBC6H62_05520 | QBJ75146.1 | OG0000212 | CP027286.1:1187220–1187717 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium chauvoei] |
| hbdC6H62_11900 | QBJ76312.1 | OG0000229 | CP027286.1:2543347–2544195 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium chauvoei] |
| thlC6H62_11345 | QBJ76231.1 | OG0000234 | CP027286.1:2440511–2441692 - | acetyl-CoA C-acetyltransferase [Clostridium chauvoei] |
| adhEC6H62_05550 | QBJ75152.1 | OG0001124 | CP027286.1:1192186–1194816 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium chauvoei] |
| lctPC6H62_01755 | QBJ74451.1 | OG0001228 | CP027286.1:361292–362812 + | L-lactate permease [Clostridium chauvoei] |
| crtC6H62_11920 | QBJ76316.1 | OG0001394 | CP027286.1:2547325–2548107 - | crotonase [Clostridium chauvoei] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.