Assembly
ASM514508v1
BioProject PRJNA534376 · BioSample SAMN11489284
GENOME-RESOLVED EVIDENCE
GCA_005145085.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4636588 bp · GC 29.000%
Completeness 95.890% · contamination 2.400%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCFBD76_03180 | QCJ05439.1 | OG0000061 | CP039705.1:681694–683046 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCFBD76_12355 | QCJ07095.1 | OG0000061 | CP039705.1:2775647–2776993 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhFBD76_00705 | QCJ04964.1 | OG0000131 | CP039705.1:125451–126404 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhFBD76_03535 | QCJ05508.1 | OG0000131 | CP039705.1:761372–762325 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhFBD76_04720 | QCJ05730.1 | OG0000131 | CP039705.1:1056971–1057909 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhFBD76_18690 | QCJ08365.1 | OG0000131 | CP039706.1:238847–239791 - | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBFBD76_03190 | QCJ05441.1 | OG0000212 | CP039705.1:683487–683993 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| accBFBD76_12350 | QCJ07094.1 | OG0000212 | CP039705.1:2775143–2775604 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| hbdFBD76_09580 | QCJ06602.1 | OG0000229 | CP039705.1:2183085–2183933 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlFBD76_10175 | QCJ06688.1 | OG0000234 | CP039705.1:2293215–2294396 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZFBD76_03185 | QCJ05440.1 | OG0000785 | CP039705.1:683055–683483 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEFBD76_07165 | QCJ06183.1 | OG0001124 | CP039705.1:1672510–1675140 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPFBD76_01205 | QCJ05058.1 | OG0001228 | CP039705.1:242534–244075 - | L-lactate permease [Clostridium butyricum] |
| crtFBD76_09560 | QCJ06598.1 | OG0001394 | CP039705.1:2179084–2179869 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.