Assembly
ASM528065v1
BioProject PRJNA540423 · BioSample SAMN11535143
GENOME-RESOLVED EVIDENCE
GCA_005280655.1
Anaerostipes rhamnosivorans · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3588860 bp · GC 44.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_137329879.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 146.600 / 0.98800 | Annotation: gene_symbol |
| coatWP_137327607.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 254.300 / 0.97700 | Annotation: specific_product_name |
| coatWP_137327608.1 · CoA transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 90.700 / 0.67300 | Bridge orthogroup OG0000263 |
| crtWP_137329020.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 343.900 / 0.98500 | Bridge orthogroup OG0002531 |
| etfAWP_137328806.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 455.200 / 0.97900 | Bridge orthogroup OG0002903 |
| etfBWP_137328807.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 354.000 / 1.00000 | Bridge orthogroup OG0002348 |
| etfBWP_137330024.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 339.500 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_137329881.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 371.100 / 0.96500 | Annotation: gene_symbol |
| fabFWP_137329880.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 581.400 / 0.99300 | Annotation: gene_symbol |
| fabGWP_137330304.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 282.100 / 0.98800 | Bridge orthogroup OG0000008 |
| fabZWP_137329878.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 186.000 / 0.76000 | Bridge orthogroup OG0000074 |
| lctPWP_137330243.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 716.400 / 0.99000 | Bridge orthogroup OG0000731 |
| rnfAWP_137328510.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 279.300 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_137328511.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 303.600 / 0.92500 | Bridge orthogroup OG0001404 |
| rnfCWP_137328506.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 373.800 / 0.74400 | Bridge orthogroup OG0001114 |
| rnfDWP_137328507.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 354.700 / 0.95000 | Bridge orthogroup OG0001182 |
| rnfEWP_137328509.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 286.300 / 0.95700 | Bridge orthogroup OG0001153 |
| rnfGWP_137328508.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 137.900 / 0.90200 | Bridge orthogroup OG0001292 |
| accCWP_137329877.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 707.200 / 0.99600 | Profile only |
| accCWP_137328229.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 504.000 / 0.98700 | Profile only |
| bcdWP_137329018.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 610.800 / 1.00000 | Profile only |
| bcdWP_137327991.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 578.900 / 0.99700 | Profile only |
| bcdWP_137330026.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 557.300 / 1.00000 | Profile only |
| bcdWP_137328035.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 546.200 / 0.99500 | Profile only |
| bcdWP_137328096.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 529.200 / 1.00000 | Profile only |
| bcdWP_137330023.1 · acryloyl-CoA reductase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 520.800 / 0.99700 | Profile only |
| bcdWP_137328815.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 461.400 / 0.99500 | Profile only |
| crtWP_137328095.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 363.300 / 0.98800 | Annotation: specific_product_name |
| crtWP_137327609.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.700 / 1.00000 | Annotation: specific_product_name |
| etfAWP_137330025.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 458.000 / 0.98200 | Profile only |
| etfAWP_137328037.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 440.100 / 0.97300 | Profile only |
| etfAWP_137329016.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 419.400 / 0.98800 | Profile only |
| etfAWP_137328813.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 391.900 / 0.99700 | Profile only |
| etfAWP_137328092.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 278.100 / 0.95800 | Profile only |
| etfBWP_137328036.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 340.700 / 1.00000 | Profile only |
| etfBWP_137329017.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 325.300 / 1.00000 | Profile only |
| etfBWP_137328814.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 251.400 / 0.99600 | Profile only |
| fabGWP_137328263.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 215.600 / 0.99600 | Profile only |
| fabGWP_137327326.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 213.600 / 0.99200 | Profile only |
| fabGWP_137327176.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.600 / 0.98800 | Profile only |
| fabGWP_137329809.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.300 / 0.96000 | Profile only |
| fabGWP_137328241.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.900 / 0.98400 | Profile only |
| fabGWP_137329777.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.600 / 0.98000 | Profile only |
| fabGWP_137329034.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.600 / 0.97200 | Profile only |
| fabGWP_207670574.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.200 / 0.98000 | Profile only |
| fabGWP_137327360.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.500 / 0.98800 | Profile only |
| fabGWP_137329190.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.800 / 0.97200 | Profile only |
| fabGWP_137328328.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 92.000 / 0.85500 | Bridge orthogroup OG0000242 |
| fabHWP_137328324.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 304.200 / 0.99100 | Profile only |
| fabLWP_137330304.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 232.500 / 0.97200 | Profile only |
| fabLWP_137329809.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.100 / 0.95200 | Profile only |
| fabLWP_137329777.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.600 / 0.98800 | Profile only |
| fabLWP_137327176.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.200 / 0.96800 | Profile only |
| fabLWP_137327326.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.500 / 0.98000 | Profile only |
| fabLWP_137328263.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 169.700 / 0.94800 | Profile only |
| fabLWP_137328241.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.700 / 0.96800 | Profile only |
| fabLWP_137329034.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 158.100 / 0.98800 | Profile only |
| fabLWP_137329190.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.400 / 0.98800 | Profile only |
| fabLWP_207670574.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 149.900 / 0.98400 | Profile only |
| fabLWP_137327360.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 149.100 / 0.98800 | Profile only |
| hbdWP_137329019.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 426.600 / 0.98900 | Profile only |
| ldhWP_137328991.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 415.100 / 0.97800 | Profile only |
| ldhWP_137329215.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 361.900 / 0.98700 | Profile only |
| thlWP_137329021.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 596.000 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.