Assembly
ASM764125v1
BioProject PRJNA523110 · BioSample SAMN10963686
GENOME-RESOLVED EVIDENCE
GCA_007641255.1
Sporomusa termitida · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5316008 bp · GC 49.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_144351739.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 125.600 / 0.98100 | Annotation: gene_symbol |
| accCWP_144351736.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 670.700 / 0.99100 | Annotation: gene_symbol |
| bcdWP_144349916.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 592.100 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_144351281.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 591.200 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_144352553.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 583.800 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_144348714.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 579.400 / 0.99700 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_144353175.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 564.900 / 0.98900 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_144353129.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 470.700 / 0.99700 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_144353149.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 385.300 / 0.97400 | Annotation: bcd_etfAB_neighborhood |
| coatWP_144349912.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 276.400 / 1.00000 | Bridge orthogroup OG0004934 |
| coatWP_144348903.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 276.400 / 0.97200 | Bridge orthogroup OG0004934 |
| coatWP_144350948.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 267.800 / 1.00000 | Bridge orthogroup OG0004934 |
| coatWP_144350724.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 266.600 / 1.00000 | Bridge orthogroup OG0004934 |
| coatWP_144351912.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 261.300 / 0.99500 | Bridge orthogroup OG0004934 |
| coatWP_144349910.1 · acetate CoA-transferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 129.500 / 0.79300 | Bridge orthogroup OG0000263 |
| coatWP_144350949.1 · CoA transferase subunit A | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 124.200 / 0.70500 | Bridge orthogroup OG0000263 |
| coatWP_144351911.1 · acetate CoA-transferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 121.300 / 0.71000 | Bridge orthogroup OG0000263 |
| coatWP_144348902.1 · acetate CoA-transferase subunit alpha | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 116.500 / 0.69600 | Bridge orthogroup OG0000263 |
| coatWP_144350725.1 · CoA transferase subunit A | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 110.900 / 0.70500 | Bridge orthogroup OG0000263 |
| etfAWP_144352551.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 455.100 / 0.97600 | Bridge orthogroup OG0001385 |
| etfAWP_144353131.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 454.200 / 0.99100 | Bridge orthogroup OG0001385 |
| etfAWP_144349920.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 449.200 / 0.99400 | Bridge orthogroup OG0001385 |
| etfAWP_144348716.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 447.900 / 0.99100 | Bridge orthogroup OG0001385 |
| etfAWP_144350575.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 442.100 / 0.99100 | Bridge orthogroup OG0001385 |
| etfAWP_144353151.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 439.700 / 0.99100 | Bridge orthogroup OG0001385 |
| etfAWP_144351279.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 435.600 / 0.99100 | Bridge orthogroup OG0001385 |
| etfBWP_144352552.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 389.600 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_144350576.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 383.600 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_144351280.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 382.800 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_144349918.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 381.400 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_144348715.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 380.200 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_144353150.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 379.300 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_144353130.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 375.200 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_144350038.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 380.800 / 0.98700 | Annotation: gene_symbol |
| fabFWP_144350041.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 652.300 / 0.99300 | Annotation: gene_symbol |
| fabGWP_144350039.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 276.700 / 0.99600 | Bridge orthogroup OG0000008 |
| fabGWP_144349901.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 259.900 / 0.98800 | Bridge orthogroup OG0000008 |
| fabZWP_425474285.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 157.800 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_144350953.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 252.500 / 0.98900 | Bridge orthogroup OG0000153 |
| hbdWP_144350730.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 214.600 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_144348828.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 441.400 / 0.99200 | Bridge orthogroup OG0000731 |
| lctPWP_144349608.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 433.000 / 0.99000 | Bridge orthogroup OG0000731 |
| ldhWP_144351125.1 · L-lactate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 323.500 / 0.98700 | Bridge orthogroup OG0001800 |
| rnfAWP_144349678.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 267.600 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_246105516.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 336.500 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_144349675.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 412.500 / 0.74800 | Bridge orthogroup OG0001114 |
| rnfDWP_144349676.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 497.300 / 0.95600 | Bridge orthogroup OG0001182 |
| rnfEWP_246105515.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 274.900 / 0.96200 | Bridge orthogroup OG0001153 |
| rnfGWP_144349677.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 147.100 / 0.90700 | Bridge orthogroup OG0001292 |
| thlWP_144350727.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 495.400 / 0.99500 | Bridge orthogroup OG0000010 |
| thlWP_144353144.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 487.200 / 0.99200 | Bridge orthogroup OG0000010 |
| thlWP_144351272.1 · acetyl-CoA C-acyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 472.200 / 0.99500 | Bridge orthogroup OG0000010 |
| thlWP_170233203.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 371.200 / 0.99000 | Bridge orthogroup OG0000010 |
| accCWP_144349257.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 518.800 / 0.98400 | Profile only |
| bcdWP_144351038.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 573.600 / 1.00000 | Profile only |
| bcdWP_144349141.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 572.200 / 1.00000 | Profile only |
| bcdWP_144351273.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 558.300 / 1.00000 | Profile only |
| bcdWP_144350454.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 493.000 / 0.99700 | Profile only |
| bcdWP_144348809.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 417.600 / 0.99500 | Profile only |
| bcdWP_144353120.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 394.400 / 0.99700 | Profile only |
| bcdWP_144348810.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 381.000 / 0.96000 | Profile only |
| crtWP_342787134.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 380.600 / 0.99600 | Annotation: specific_product_name |
| crtWP_144352806.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 376.700 / 0.99600 | Annotation: specific_product_name |
| crtWP_144350954.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 376.200 / 0.99600 | Annotation: specific_product_name |
| crtWP_144353147.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 368.700 / 0.99200 | Annotation: specific_product_name |
| crtWP_144348718.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 368.400 / 0.98800 | Annotation: specific_product_name |
| crtWP_144349139.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 322.000 / 0.99200 | Annotation: specific_product_name |
| crtWP_211367492.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 149.900 / 0.98500 | Profile only |
| fabGWP_144352557.1 · beta-ketoacyl-ACP reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 245.500 / 0.98400 | Bridge orthogroup OG0000008 |
| fabGWP_246105636.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.200 / 0.98800 | Profile only |
| fabGWP_144353125.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.100 / 0.97200 | Profile only |
| fabGWP_144349930.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.300 / 0.98800 | Profile only |
| fabGWP_144350946.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.800 / 0.97600 | Profile only |
| fabGWP_144350728.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.200 / 0.98000 | Profile only |
| fabGWP_144350812.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.900 / 0.99200 | Profile only |
| fabGWP_144348725.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.500 / 0.98400 | Bridge orthogroup OG0000008 |
| fabHWP_144350036.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 346.300 / 0.99700 | Profile only |
| fabHWP_144352418.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 333.400 / 0.99100 | Profile only |
| fabKWP_246105610.1 · DUF561 domain-containing protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 432.500 / 0.92400 | Profile only |
| fabKWP_144348487.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 410.700 / 0.98400 | Profile only |
| fabKWP_144350040.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 256.700 / 0.94300 | Profile only |
| fabLWP_144353125.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 221.300 / 0.97600 | Profile only |
| fabLWP_144349901.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.100 / 0.96800 | Profile only |
| fabLWP_246105636.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 205.700 / 0.98800 | Profile only |
| fabLWP_144352557.1 · beta-ketoacyl-ACP reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.900 / 0.98800 | Profile only |
| fabLWP_144350946.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.600 / 0.97600 | Profile only |
| fabLWP_144348725.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.700 / 0.98400 | Profile only |
| fabLWP_144350812.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.600 / 0.99200 | Profile only |
| fabLWP_144349930.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.600 / 0.97600 | Profile only |
| fabLWP_144350728.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 166.200 / 0.98800 | Profile only |
| hbdWP_144353145.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 407.300 / 1.00000 | Profile only |
| hbdWP_144352549.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 401.400 / 0.99600 | Profile only |
| hbdWP_144348717.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 394.400 / 0.99600 | Profile only |
| hbdWP_211367518.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 367.000 / 0.99600 | Profile only |
| hbdWP_170233301.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 305.800 / 0.99300 | Profile only |
| rnfCWP_144351837.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 572.100 / 0.98900 | Profile only |
| thlWP_144352554.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 612.700 / 0.99700 | Profile only |
| thlWP_144349914.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 607.300 / 0.99700 | Profile only |
| thlWP_144350951.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 606.200 / 0.99700 | Profile only |
| thlWP_144351914.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 601.800 / 0.99700 | Profile only |
| thlWP_144350723.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 592.000 / 0.99700 | Profile only |
| thlWP_144348713.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 590.000 / 0.99700 | Profile only |
| fabLWP_144350039.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 215.000 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.