Assembly
ASM783337v1
BioProject PRJNA391949 · BioSample SAMN07185489
GENOME-RESOLVED EVIDENCE
GCA_007833375.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3984154 bp · GC 28.000%
Completeness 99.490% · contamination 0.680%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCGQ26_18670 | QDY15448.1 | OG0000061 | CP022395.1:3937008–3938354 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZCGQ26_11010 | QDY14043.1 | OG0000119 | CP022395.1:2388284–2389975 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhCGQ26_08080 | QDY13509.1 | OG0000131 | CP022395.1:1749248–1750204 - | L-lactate dehydrogenase [Clostridium botulinum] |
| fabHCGQ26_18710 | QDY15456.1 | OG0000222 | CP022395.1:3943624–3944604 - | 3-oxoacyl-ACP synthase III [Clostridium botulinum] |
| hbdCGQ26_16310 | QDY15029.1 | OG0000229 | CP022395.1:3472221–3473051 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlCGQ26_16305 | QDY15028.1 | OG0000234 | CP022395.1:3471018–3472196 - | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| accDCGQ26_18665 | QDY15447.1 | OG0000403 | CP022395.1:3936119–3936988 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium botulinum] |
| accACGQ26_18660 | QDY15446.1 | OG0000885 | CP022395.1:3935233–3936072 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhECGQ26_02010 | QDY12376.1 | OG0001124 | CP022395.1:451291–453879 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPCGQ26_05480 | QDY13014.1 | OG0001228 | CP022395.1:1192938–1194461 + | L-lactate permease [Clostridium botulinum] |
| crtCGQ26_16315 | QDY15030.1 | OG0001639 | CP022395.1:3473071–3473853 - | crotonase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.