Assembly
ASM783339v1
BioProject PRJNA391949 · BioSample SAMN07185500
GENOME-RESOLVED EVIDENCE
GCA_007833395.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4211164 bp · GC 28.000%
Completeness 98.980% · contamination 1.270%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCGQ27_20220 | QDY19284.1 | OG0000061 | CP022396.1:4164018–4165364 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZCGQ27_12330 | QDY17836.1 | OG0000119 | CP022396.1:2574711–2576405 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhCGQ27_08525 | QDY17133.1 | OG0000131 | CP022396.1:1773113–1774069 - | L-lactate dehydrogenase [Clostridium botulinum] |
| fabHCGQ27_20260 | QDY19292.1 | OG0000222 | CP022396.1:4170634–4171614 - | 3-oxoacyl-ACP synthase III [Clostridium botulinum] |
| hbdCGQ27_17890 | QDY18872.1 | OG0000229 | CP022396.1:3705073–3705903 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlCGQ27_17885 | QDY18871.1 | OG0000234 | CP022396.1:3703870–3705048 - | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| accDCGQ27_20215 | QDY19283.1 | OG0000403 | CP022396.1:4163129–4163998 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium botulinum] |
| accACGQ27_20210 | QDY19282.1 | OG0000885 | CP022396.1:4162243–4163082 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhECGQ27_01940 | QDY15916.1 | OG0001124 | CP022396.1:422252–424840 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPCGQ27_05520 | QDY16569.1 | OG0001228 | CP022396.1:1174841–1176364 + | L-lactate permease [Clostridium botulinum] |
| rnfACGQ27_02075 | QDY15942.1 | OG0001328 | CP022396.1:455519–456097 + | electron transport complex protein RnfA [Clostridium botulinum] |
| crtCGQ27_17895 | QDY18873.1 | OG0001639 | CP022396.1:3705934–3706716 - | crotonase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.