Assembly
ASM783341v1
BioProject PRJNA391949 · BioSample SAMN07185504
GENOME-RESOLVED EVIDENCE
GCA_007833415.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4108310 bp · GC 28.000%
Completeness 99.490% · contamination 0.780%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCGQ39_19505 | QDY23033.1 | OG0000061 | CP022397.1:3989366–3990712 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZCGQ39_11335 | QDY21517.1 | OG0000119 | CP022397.1:2374712–2376406 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhCGQ39_08010 | QDY20908.1 | OG0000131 | CP022397.1:1686082–1687038 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBCGQ39_19515 | QDY23035.1 | OG0000212 | CP022397.1:3991198–3991674 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium botulinum] |
| hbdCGQ39_17295 | QDY22641.1 | OG0000229 | CP022397.1:3555259–3556089 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlCGQ39_17290 | QDY22640.1 | OG0000234 | CP022397.1:3554056–3555234 - | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| accACGQ39_19495 | QDY23031.1 | OG0000885 | CP022397.1:3987591–3988430 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhECGQ39_01930 | QDY19772.1 | OG0001124 | CP022397.1:398584–401172 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPCGQ39_05390 | QDY20414.1 | OG0001228 | CP022397.1:1124318–1125841 + | L-lactate permease [Clostridium botulinum] |
| crtCGQ39_17300 | QDY22642.1 | OG0001639 | CP022397.1:3556120–3556902 - | crotonase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.