Assembly
ASM783343v1
BioProject PRJNA391949 · BioSample SAMN07185514
GENOME-RESOLVED EVIDENCE
GCA_007833435.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4378801 bp · GC 28.000%
Completeness 98.730% · contamination 1.220%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCGQ40_19600 | QDY26826.1 | OG0000061 | CP022400.1:4071633–4072979 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZCGQ40_11810 | QDY25399.1 | OG0000119 | CP022400.1:2499246–2500940 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhCGQ40_08340 | QDY24767.1 | OG0000131 | CP022400.1:1764181–1765137 - | L-lactate dehydrogenase [Clostridium botulinum] |
| fabHCGQ40_19640 | QDY26834.1 | OG0000222 | CP022400.1:4078249–4079229 - | 3-oxoacyl-ACP synthase III [Clostridium botulinum] |
| hbdCGQ40_16990 | QDY26359.1 | OG0000229 | CP022400.1:3573084–3573914 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlCGQ40_16985 | QDY26358.1 | OG0000234 | CP022400.1:3571881–3573059 - | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| accDCGQ40_19595 | QDY26825.1 | OG0000403 | CP022400.1:4070745–4071614 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium botulinum] |
| accACGQ40_19590 | QDY26824.1 | OG0000885 | CP022400.1:4069859–4070698 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhECGQ40_01955 | QDY23583.1 | OG0001124 | CP022400.1:434512–437100 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPCGQ40_05370 | QDY24208.1 | OG0001228 | CP022400.1:1172117–1173640 + | L-lactate permease [Clostridium botulinum] |
| rnfACGQ40_02090 | QDY23609.1 | OG0001328 | CP022400.1:467779–468357 + | electron transport complex protein RnfA [Clostridium botulinum] |
| crtCGQ40_16995 | QDY26360.1 | OG0001639 | CP022400.1:3573945–3574727 - | crotonase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.