Assembly
ASM783345v1
BioProject PRJNA391949 · BioSample SAMN07185521
GENOME-RESOLVED EVIDENCE
GCA_007833455.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3951228 bp · GC 28.000%
Completeness 99.490% · contamination 0.760%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCGQ41_18445 | QDY30666.1 | OG0000061 | CP022403.1:3883387–3884733 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZCGQ41_11070 | QDY29309.1 | OG0000119 | CP022403.1:2386577–2388271 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhCGQ41_08095 | QDY28772.1 | OG0000131 | CP022403.1:1735005–1735961 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBCGQ41_18455 | QDY30668.1 | OG0000212 | CP022403.1:3885219–3885695 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium botulinum] |
| hbdCGQ41_16295 | QDY30288.1 | OG0000229 | CP022403.1:3456179–3457009 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlCGQ41_16290 | QDY30287.1 | OG0000234 | CP022403.1:3454976–3456154 - | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| fabGCGQ41_13620 | QDY29791.1 | OG0000440 | CP022403.1:2872746–2873600 - | 3-oxoacyl-ACP reductase [Clostridium botulinum] |
| accACGQ41_18435 | QDY30664.1 | OG0000885 | CP022403.1:3881612–3882451 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhECGQ41_02090 | QDY27662.1 | OG0001124 | CP022403.1:467237–469825 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPCGQ41_05580 | QDY28295.1 | OG0001228 | CP022403.1:1197256–1198779 + | L-lactate permease [Clostridium botulinum] |
| rnfACGQ41_02225 | QDY27688.1 | OG0001328 | CP022403.1:500415–500993 + | electron transport complex protein RnfA [Clostridium botulinum] |
| crtCGQ41_16300 | QDY30289.1 | OG0001639 | CP022403.1:3457040–3457822 - | crotonase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.