Assembly
ASM783347v1
BioProject PRJNA391949 · BioSample SAMN07185535
GENOME-RESOLVED EVIDENCE
GCA_007833475.1
Clostridium sporogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4340625 bp · GC 28.000%
Completeness 95.040% · contamination 3.120%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCGS26_18860 | QDY34296.1 | OG0000061 | CP022405.1:4026011–4027357 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sporogenes] |
| fabZCGS26_11695 | QDY32973.1 | OG0000119 | CP022405.1:2521303–2522997 + | 3-hydroxyacyl-ACP dehydratase [Clostridium sporogenes] |
| ldhCGS26_08130 | QDY32318.1 | OG0000131 | CP022405.1:1741591–1742547 - | L-lactate dehydrogenase [Clostridium sporogenes] |
| hbdCGS26_16520 | QDY33879.1 | OG0000229 | CP022405.1:3561423–3562253 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sporogenes] |
| thlCGS26_16515 | QDY33878.1 | OG0000234 | CP022405.1:3560220–3561398 - | acetyl-CoA C-acetyltransferase [Clostridium sporogenes] |
| accACGS26_18850 | QDY34294.1 | OG0000885 | CP022405.1:4024236–4025075 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium sporogenes] |
| adhECGS26_01870 | QDY31149.1 | OG0001124 | CP022405.1:398195–400783 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sporogenes] |
| lctPCGS26_05285 | QDY31784.1 | OG0001228 | CP022405.1:1123240–1124763 + | L-lactate permease [Clostridium sporogenes] |
| rnfACGS26_02015 | QDY31177.1 | OG0001328 | CP022405.1:436682–437260 + | electron transport complex protein RnfA [Clostridium sporogenes] |
| crtCGS26_16525 | QDY33880.1 | OG0001639 | CP022405.1:3562273–3563055 - | crotonase [Clostridium sporogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.