Assembly
ASM870517v1
BioProject PRJNA565754 · BioSample SAMN12767048
GENOME-RESOLVED EVIDENCE
GCA_008705175.1
Clostridium diolis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5940808 bp · GC 30.000%
Completeness 98.760% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfC | Rnf complex subunit C | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 4 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| rnfCF3K33_20695 | QES75078.1 | OG0000037 | CP043998.1:4579165–4580490 - | electron transport complex protein RnfC [Clostridium diolis] |
| accCF3K33_05640 | QES72317.1 | OG0000061 | CP043998.1:1246344–1247696 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium diolis] |
| accCF3K33_13905 | QES73860.1 | OG0000061 | CP043998.1:3100518–3101861 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium diolis] |
| ldhF3K33_05320 | QES72257.1 | OG0000131 | CP043998.1:1172699–1173649 + | L-lactate dehydrogenase [Clostridium diolis] |
| ldhF3K33_14085 | QES73894.1 | OG0000131 | CP043998.1:3139173–3140126 - | L-lactate dehydrogenase [Clostridium diolis] |
| ldhF3K33_20835 | QES75104.1 | OG0000131 | CP043998.1:4607164–4608114 - | L-lactate dehydrogenase [Clostridium diolis] |
| ldhF3K33_25200 | QES75929.1 | OG0000131 | CP043998.1:5717297–5718244 - | L-lactate dehydrogenase [Clostridium diolis] |
| accBF3K33_05630 | QES72315.1 | OG0000212 | CP043998.1:1245382–1245897 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium diolis] |
| hbdF3K33_01640 | QES71591.1 | OG0000229 | CP043998.1:335954–336802 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium diolis] |
| thlF3K33_02355 | QES71706.1 | OG0000234 | CP043998.1:469729–470910 + | acetyl-CoA C-acetyltransferase [Clostridium diolis] |
| thlF3K33_18480 | QES74673.1 | OG0000234 | CP043998.1:4093313–4094491 - | acetyl-CoA C-acetyltransferase [Clostridium diolis] |
| fabZF3K33_05635 | QES72316.1 | OG0000785 | CP043998.1:1245901–1246329 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium diolis] |
| adhEF3K33_01540 | QES71572.1 | OG0001124 | CP043998.1:308416–311010 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium diolis] |
| lctPF3K33_14630 | QES73990.1 | OG0001228 | CP043998.1:3275830–3277365 - | L-lactate permease [Clostridium diolis] |
| crtF3K33_01620 | QES71587.1 | OG0001394 | CP043998.1:331979–332764 + | short-chain-enoyl-CoA hydratase [Clostridium diolis] |
| crtF3K33_10105 | QES73157.1 | OG0001394 | CP043998.1:2231199–2231984 + | short-chain-enoyl-CoA hydratase [Clostridium diolis] |
| crtF3K33_11265 | QES73374.1 | OG0008680 | CP043998.1:2493393–2494223 + | enoyl-CoA hydratase/isomerase family protein [Clostridium diolis] |
| crtF3K33_11270 | QES73375.1 | OG0008680 | CP043998.1:2494366–2495202 + | enoyl-CoA hydratase/isomerase family protein [Clostridium diolis] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.