Assembly
ASM887666v1
BioProject PRJNA566223 · BioSample SAMN12784883
GENOME-RESOLVED EVIDENCE
GCA_008876665.1
Limosilactobacillus frumenti · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 1752928 bp · GC 42.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_151495809.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 318.500 / 0.94900 | Bridge orthogroup OG0001120 |
| accBWP_181578083.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 126.800 / 0.99400 | Profile only |
| accCWP_057749690.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 654.700 / 0.99600 | Annotation: gene_symbol |
| accDWP_057749687.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 371.100 / 0.89100 | Bridge orthogroup OG0000844 |
| adhEWP_057748433.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1073.600 / 0.99200 | Bridge orthogroup OG0002334 |
| fabFWP_057749696.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 519.500 / 0.98800 | Annotation: gene_symbol |
| fabGWP_057749699.1 · 3-oxoacyl-ACP reductase FabG | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 221.500 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_057749681.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 326.200 / 0.96900 | Annotation: gene_symbol |
| fabZWP_057749693.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 152.100 / 0.74900 | Bridge orthogroup OG0000074 |
| fabZWP_057749712.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 135.100 / 0.77000 | Bridge orthogroup OG0000074 |
| hbdWP_057750679.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 312.700 / 0.98900 | Bridge orthogroup OG0000153 |
| thlWP_057749762.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 511.300 / 0.99500 | Bridge orthogroup OG0000010 |
| fabGWP_181577934.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 210.800 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_057750880.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.200 / 0.99200 | Profile only |
| fabGWP_057752411.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.100 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_057752461.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.600 / 0.97600 | Bridge orthogroup OG0000008 |
| fabGWP_057750303.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.400 / 0.88300 | Bridge orthogroup OG0000242 |
| fabGWP_057748953.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 158.900 / 0.99200 | Profile only |
| fabGWP_057752128.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 136.000 / 0.99200 | Profile only |
| fabHWP_057749706.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 279.500 / 0.98500 | Profile only |
| fabLWP_181577934.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.600 / 0.97200 | Profile only |
| fabLWP_057752411.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.700 / 0.99200 | Profile only |
| fabLWP_057749699.1 · 3-oxoacyl-ACP reductase FabG | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.500 / 0.97600 | Profile only |
| fabLWP_057752461.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.800 / 0.98800 | Profile only |
| fabLWP_057750880.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.900 / 0.98800 | Profile only |
| fabLWP_057748953.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 150.600 / 0.99200 | Profile only |
| fabLWP_057750303.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 141.000 / 0.88900 | Profile only |
| fabLWP_057752128.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 118.100 / 0.97600 | Profile only |
| ldhWP_057750426.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 386.600 / 0.98100 | Profile only |
| ldhWP_057750981.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 351.300 / 0.98100 | Profile only |
| ldhWP_057751857.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 334.200 / 0.98400 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.