Assembly
ASM942896v1
BioProject PRJNA566218 · BioSample SAMN12784819
GENOME-RESOLVED EVIDENCE
GCA_009428965.1
Limosilactobacillus pontis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 1714771 bp · GC 53.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| adhEWP_057807457.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1065.700 / 0.99000 | Bridge orthogroup OG0002334 |
| hbdWP_057808312.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 297.000 / 0.98900 | Bridge orthogroup OG0000153 |
| thlWP_057807864.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 516.600 / 0.99700 | Bridge orthogroup OG0000010 |
| fabGWP_057805882.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.600 / 0.96400 | Bridge orthogroup OG0000008 |
| fabGWP_057805794.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.500 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_057806094.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.100 / 0.95200 | Profile only |
| fabGWP_057808186.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 165.800 / 0.87900 | Bridge orthogroup OG0000242 |
| fabGWP_057807983.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 147.900 / 0.75000 | Profile only |
| fabGWP_057806522.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 125.700 / 0.98800 | Profile only |
| fabLWP_057805794.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 189.600 / 0.97600 | Profile only |
| fabLWP_057805882.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 181.400 / 0.96800 | Profile only |
| fabLWP_057807983.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.600 / 0.79400 | Profile only |
| fabLWP_057806094.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.900 / 0.96000 | Profile only |
| fabLWP_057808186.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 145.300 / 0.88900 | Profile only |
| ldhWP_057808221.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 386.000 / 0.98700 | Profile only |
| ldhWP_057807625.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 366.500 / 0.98100 | Profile only |
| ldhWP_057806649.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 318.900 / 0.98100 | Profile only |
| ldhWP_057806533.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 252.000 / 0.96800 | Profile only |
| ldhWP_057808321.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 226.000 / 0.96500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.