Assembly
ASM965031v1
BioProject PRJNA498210 · BioSample SAMN10285205
GENOME-RESOLVED EVIDENCE
GCA_009650315.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4746849 bp · GC 29.000%
Completeness 96.390% · contamination 2.700%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfB | electron transfer flavoprotein beta subunit | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCEBL75_08865 | QGH21669.1 | OG0000061 | CP033247.1:1053421–1054767 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCEBL75_16410 | QGH23097.1 | OG0000061 | CP033247.1:2673467–2674819 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhEBL75_03665 | QGH20728.1 | OG0000131 | CP033246.1:821336–822280 - | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| ldhEBL75_14125 | QGH22658.1 | OG0000131 | CP033247.1:2159531–2160484 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhEBL75_16760 | QGH23164.1 | OG0000131 | CP033247.1:2751243–2752196 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhEBL75_18185 | QGH23434.1 | OG0000131 | CP033247.1:3096338–3097276 + | L-lactate dehydrogenase [Clostridium butyricum] |
| accBEBL75_08860 | QGH21668.1 | OG0000212 | CP033247.1:1052917–1053378 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| accBEBL75_16420 | QGH23099.1 | OG0000212 | CP033247.1:2675260–2675766 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdEBL75_05875 | QGH21139.1 | OG0000229 | CP033247.1:415465–416313 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlEBL75_06480 | QGH21226.1 | OG0000234 | CP033247.1:528351–529532 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| adhEEBL75_20700 | QGH23896.1 | OG0001124 | CP033247.1:3729999–3732629 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPEBL75_14600 | QGH22749.1 | OG0001228 | CP033247.1:2270512–2272053 - | L-lactate permease [Clostridium butyricum] |
| crtEBL75_05855 | QGH21135.1 | OG0001394 | CP033247.1:411464–412249 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
| etfBEBL75_14610 | QGH22751.1 | OG0004576 | CP033247.1:2273297–2274082 - | electron transfer flavoprotein beta subunit/FixA family protein [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.