Assembly
ASM965033v1
BioProject PRJNA498210 · BioSample SAMN10285378
GENOME-RESOLVED EVIDENCE
GCA_009650335.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4746782 bp · GC 29.000%
Completeness 96.560% · contamination 2.700%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfB | electron transfer flavoprotein beta subunit | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCEBQ27_08870 | QGH25708.1 | OG0000061 | CP033249.1:1053420–1054766 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCEBQ27_16410 | QGH27140.1 | OG0000061 | CP033249.1:2673461–2674813 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhEBQ27_03665 | QGH24769.1 | OG0000131 | CP033248.1:821352–822296 - | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| ldhEBQ27_14125 | QGH26699.1 | OG0000131 | CP033249.1:2159527–2160480 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhEBQ27_16760 | QGH27207.1 | OG0000131 | CP033249.1:2751237–2752190 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhEBQ27_18185 | QGH27478.1 | OG0000131 | CP033249.1:3096329–3097267 + | L-lactate dehydrogenase [Clostridium butyricum] |
| accBEBQ27_08865 | QGH25707.1 | OG0000212 | CP033249.1:1052916–1053377 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| accBEBQ27_16420 | QGH27142.1 | OG0000212 | CP033249.1:2675254–2675760 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdEBQ27_05875 | QGH25178.1 | OG0000229 | CP033249.1:415468–416316 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlEBQ27_06480 | QGH25264.1 | OG0000234 | CP033249.1:528353–529534 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| adhEEBQ27_20705 | QGH27941.1 | OG0001124 | CP033249.1:3729973–3732603 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPEBQ27_14600 | QGH26791.1 | OG0001228 | CP033249.1:2270509–2272050 - | L-lactate permease [Clostridium butyricum] |
| crtEBQ27_05855 | QGH25174.1 | OG0001394 | CP033249.1:411467–412252 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
| etfBEBQ27_14610 | QGH26793.1 | OG0004576 | CP033249.1:2273294–2274079 - | electron transfer flavoprotein beta subunit/FixA family protein [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.