Assembly
ASM973388v1
BioProject PRJNA589706 · BioSample SAMN13288210
GENOME-RESOLVED EVIDENCE
GCA_009733885.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3903111 bp · GC 28.000%
Completeness 98.860% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| lldRGJ703_01233 | QGT43056.1 | OG0000074 | CP046450.1:1306015–1306707 - | Putative L-lactate dehydrogenase operon regulatory protein [Clostridium botulinum] |
| ldhGJ703_00820 | QGT42643.1 | OG0000131 | CP046450.1:852830–853786 + | L-lactate dehydrogenase [Clostridium botulinum] |
| hbdGJ703_02829 | QGT44556.1 | OG0000229 | CP046450.1:2982608–2983438 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlAGJ703_02830 | QGT44557.1 | OG0000234 | CP046450.1:2983463–2984641 + | Acetyl-CoA acetyltransferase [Clostridium botulinum] |
| crtGJ703_02828 | QGT44555.1 | OG0001639 | CP046450.1:2981795–2982577 + | Short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| ldhBGJ703_03426 | QGT45145.1 | OG0004579 | CP046450.1:3642724–3643947 - | L-lactate dehydrogenase 2 [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.