Assembly
ASM1227183v1
BioProject PRJNA606345 · BioSample SAMN14089789
GENOME-RESOLVED EVIDENCE
GCA_012271835.1
[Clostridium] innocuum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4289702 bp · GC 44.000%
Completeness 87.920% · contamination 2.800%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCG4D55_14300 | QIX10169.1 | OG0000061 | CP048837.1:2950672–2952039 - | acetyl-CoA carboxylase biotin carboxylase subunit [[Clostridium] innocuum] |
| ldhG4D55_14695 | QIX10247.1 | OG0000131 | CP048837.1:3038720–3039670 - | L-lactate dehydrogenase [[Clostridium] innocuum] |
| ldhG4D55_14700 | QIX10248.1 | OG0000131 | CP048837.1:3039775–3040725 - | L-lactate dehydrogenase [[Clostridium] innocuum] |
| accBG4D55_14305 | QIX10170.1 | OG0000212 | CP048837.1:2952036–2952500 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [[Clostridium] innocuum] |
| hbdG4D55_11840 | QIX09729.1 | OG0000229 | CP048837.1:2446539–2447378 - | 3-hydroxybutyryl-CoA dehydrogenase [[Clostridium] innocuum] |
| thlG4D55_11860 | QIX09733.1 | OG0000234 | CP048837.1:2450795–2452003 + | acetyl-CoA C-acetyltransferase [[Clostridium] innocuum] |
| thlG4D55_11865 | QIX09734.1 | OG0000234 | CP048837.1:2452200–2453405 + | acetyl-CoA C-acetyltransferase [[Clostridium] innocuum] |
| fabZG4D55_14255 | QIX10160.1 | OG0000785 | CP048837.1:2942465–2942899 - | 3-hydroxyacyl-ACP dehydratase FabZ [[Clostridium] innocuum] |
| crtG4D55_11835 | QIX09728.1 | OG0011992 | CP048837.1:2445659–2446438 - | short-chain-enoyl-CoA hydratase [[Clostridium] innocuum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.