Assembly
ASM1231718v1
BioProject PRJNA606345 · BioSample SAMN14089795
GENOME-RESOLVED EVIDENCE
GCA_012317185.1
[Clostridium] innocuum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4718906 bp · GC 43.500%
Completeness 87.920% · contamination 3.990%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCG4D54_15860 | QJA03804.1 | OG0000061 | CP048838.1:3247549–3248916 - | acetyl-CoA carboxylase biotin carboxylase subunit [[Clostridium] innocuum] |
| ldhG4D54_16250 | QJA03879.1 | OG0000131 | CP048838.1:3333941–3334891 - | L-lactate dehydrogenase [[Clostridium] innocuum] |
| ldhG4D54_16255 | QJA03880.1 | OG0000131 | CP048838.1:3334996–3335946 - | L-lactate dehydrogenase [[Clostridium] innocuum] |
| accBG4D54_15865 | QJA03805.1 | OG0000212 | CP048838.1:3248913–3249374 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [[Clostridium] innocuum] |
| hbdG4D54_12370 | QJA03185.1 | OG0000229 | CP048838.1:2556969–2557808 - | 3-hydroxybutyryl-CoA dehydrogenase [[Clostridium] innocuum] |
| thlG4D54_12390 | QJA03189.1 | OG0000234 | CP048838.1:2561225–2562433 + | acetyl-CoA C-acetyltransferase [[Clostridium] innocuum] |
| thlG4D54_12395 | QJA03190.1 | OG0000234 | CP048838.1:2562630–2563835 + | acetyl-CoA C-acetyltransferase [[Clostridium] innocuum] |
| fabZG4D54_15815 | QJA03795.1 | OG0000785 | CP048838.1:3239342–3239776 - | 3-hydroxyacyl-ACP dehydratase FabZ [[Clostridium] innocuum] |
| crtG4D54_12365 | QJA03184.1 | OG0011992 | CP048838.1:2556089–2556868 - | enoyl-CoA hydratase [[Clostridium] innocuum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.