Assembly
ASM1311241v1
BioProject PRJNA630842 · BioSample SAMN14846469
GENOME-RESOLVED EVIDENCE
GCA_013112415.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4630815 bp · GC 28.500%
Completeness 96.070% · contamination 2.400%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCHLV60_03730 | QJU43507.1 | OG0000061 | CP053292.1:930479–931831 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCHLV60_12335 | QJU45134.1 | OG0000061 | CP053292.1:2703840–2705186 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhHLV60_02165 | QJU43208.1 | OG0000131 | CP053292.1:555613–556551 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhHLV60_03370 | QJU43436.1 | OG0000131 | CP053292.1:851199–852152 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhHLV60_06215 | QJU43979.1 | OG0000131 | CP053292.1:1487123–1488076 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhHLV60_20125 | QJU46608.1 | OG0000131 | CP053293.1:510921–511865 - | L-lactate dehydrogenase [Clostridium butyricum] |
| accBHLV60_03720 | QJU43505.1 | OG0000212 | CP053292.1:929532–930038 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| accBHLV60_12340 | QJU45135.1 | OG0000212 | CP053292.1:2705229–2705690 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| hbdHLV60_15115 | QJU45623.1 | OG0000229 | CP053292.1:3296904–3297752 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlHLV60_14520 | QJU45536.1 | OG0000234 | CP053292.1:3186441–3187622 - | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZHLV60_03725 | QJU43506.1 | OG0000785 | CP053292.1:930042–930470 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEHLV60_17525 | QJU46043.1 | OG0001124 | CP053292.1:3799893–3802523 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPHLV60_05715 | QJU43886.1 | OG0001228 | CP053292.1:1369452–1370993 + | L-lactate permease [Clostridium butyricum] |
| crtHLV60_15135 | QJU45627.1 | OG0001394 | CP053292.1:3300968–3301753 - | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.