Assembly
ASM1331581v1
BioProject PRJNA588583 · BioSample SAMN13254329
GENOME-RESOLVED EVIDENCE
GCA_013315815.1
Caproicibacterium lactatifermentans · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 1989979 bp · GC 50.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_086035778.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 342.600 / 0.96000 | Bridge orthogroup OG0001120 |
| accBWP_086035782.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 152.900 / 0.98100 | Annotation: gene_symbol |
| accCWP_086035780.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 658.000 / 0.99300 | Annotation: gene_symbol |
| accDWP_086035779.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 392.200 / 0.91100 | Bridge orthogroup OG0000844 |
| bcdWP_086035133.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 567.700 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| crtWP_086035923.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 329.100 / 0.96500 | Bridge orthogroup OG0002531 |
| etfAWP_086035132.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 427.800 / 0.98200 | Bridge orthogroup OG0001385 |
| etfBWP_086035131.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 351.900 / 1.00000 | Bridge orthogroup OG0001139 |
| fabFWP_174193146.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 540.200 / 0.99300 | Annotation: gene_symbol |
| fabGWP_086035784.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 247.200 / 0.97200 | Bridge orthogroup OG0000008 |
| fabKWP_174193144.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 486.400 / 0.99700 | Annotation: gene_symbol |
| fabZWP_086035781.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 81.300 / 0.74900 | Bridge orthogroup OG0000074 |
| lctPWP_236849684.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 603.000 / 0.98000 | Bridge orthogroup OG0000731 |
| rnfAWP_174193065.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 236.500 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_086035903.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 249.200 / 0.93900 | Bridge orthogroup OG0001404 |
| rnfCWP_086035899.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 337.700 / 0.73900 | Bridge orthogroup OG0001114 |
| rnfDWP_086035900.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 362.500 / 0.94400 | Bridge orthogroup OG0001182 |
| rnfEWP_174193067.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 260.600 / 0.94200 | Bridge orthogroup OG0001153 |
| fabZWP_086035976.1 · acyl-CoA dehydratase activase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 58.400 / 0.93400 | Profile only |
| bcdWP_174193440.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 565.100 / 0.99700 | Profile only |
| fabGWP_086036616.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 226.400 / 0.96800 | Profile only |
| fabGWP_086036673.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 90.900 / 0.82700 | Bridge orthogroup OG0000242 |
| fabGWP_086036403.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 90.200 / 0.78600 | Bridge orthogroup OG0000242 |
| fabHWP_174193135.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 250.900 / 0.98500 | Profile only |
| fabLWP_086035784.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.300 / 0.98400 | Profile only |
| fabLWP_086036616.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 203.700 / 0.95200 | Profile only |
| hbdWP_174193045.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 408.000 / 0.98200 | Profile only |
| ldhWP_086036714.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 259.500 / 0.98700 | Profile only |
| thlWP_086035924.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 573.900 / 0.99500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| hbdGJQ69_04200 | QKN23749.1 | Unmapped | :None–None | 3-hydroxybutyryl-CoA dehydrogenase |
| accBGJQ69_04985 | QKN23889.1 | Unmapped | :None–None | acetyl-CoA carboxylase biotin carboxyl carrier protein |
| accCGJQ69_04995 | QKN23891.1 | Unmapped | :None–None | acetyl-CoA carboxylase biotin carboxylase subunit |
| accGJQ69_05000 | QKN23892.1 | Unmapped | :None–None | acetyl-CoA carboxylase carboxyltransferase subunit beta |
| accGJQ69_05005 | QKN23893.1 | Unmapped | :None–None | acetyl-CoA carboxylase carboxyltransferase subunit alpha |
| ldhGJQ69_09295 | QKN24832.1 | Unmapped | :None–None | L-lactate dehydrogenase |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.