Assembly
ASM1342386v1
BioProject PRJNA645733 · BioSample SAMN15515560
GENOME-RESOLVED EVIDENCE
GCA_013423865.1
Limosilactobacillus mucosae · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2175821 bp · GC 46.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_180305008.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 320.300 / 0.95200 | Bridge orthogroup OG0001120 |
| accBWP_034541310.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 122.700 / 0.98800 | Profile only |
| accBWP_240164311.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 113.300 / 0.98800 | Profile only |
| accCWP_180305006.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 646.200 / 0.99300 | Annotation: gene_symbol |
| accDWP_180305007.1 · acetyl-CoA carboxylase carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support | 351.600 / 0.94500 | Bridge orthogroup OG0000844 |
| adhEWP_006500481.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1075.200 / 0.99200 | Bridge orthogroup OG0002334 |
| fabFWP_033934307.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 521.000 / 0.98800 | Annotation: gene_symbol |
| fabGWP_180305004.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 221.500 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_180305009.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 340.400 / 0.96900 | Annotation: gene_symbol |
| fabZWP_180305005.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 168.000 / 0.76000 | Bridge orthogroup OG0000074 |
| fabZWP_033934303.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 137.500 / 0.76500 | Bridge orthogroup OG0000074 |
| thlWP_180305164.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 523.500 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_180304320.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 537.900 / 0.98700 | Profile only |
| accCWP_180305010.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 527.600 / 0.98400 | Profile only |
| fabGWP_109588286.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.900 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_180305306.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.700 / 0.98000 | Bridge orthogroup OG0000008 |
| fabGWP_180304343.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.800 / 0.98800 | Profile only |
| fabGWP_180304779.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.800 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_240164324.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 169.900 / 0.98400 | Profile only |
| fabGWP_180305144.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.500 / 0.89100 | Bridge orthogroup OG0000242 |
| fabHWP_180305002.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 270.700 / 0.98500 | Profile only |
| fabLWP_109588286.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.800 / 0.97200 | Profile only |
| fabLWP_180305004.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.500 / 0.97600 | Profile only |
| fabLWP_180304343.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.500 / 0.98000 | Profile only |
| fabLWP_180304779.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.000 / 0.99200 | Profile only |
| fabLWP_240164324.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 158.700 / 0.98400 | Profile only |
| fabLWP_180305306.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 146.700 / 0.97600 | Profile only |
| fabLWP_180305144.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 142.200 / 0.89700 | Profile only |
| ldhWP_180305210.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 378.100 / 0.98400 | Profile only |
| ldhWP_180304279.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 362.700 / 0.98100 | Profile only |
| ldhWP_180304747.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 310.700 / 0.97500 | Profile only |
| ldhWP_180304795.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 264.800 / 0.97800 | Profile only |
| ldhWP_180305024.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 242.500 / 0.96500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.