Assembly
ASM1378188v1
BioProject PRJNA644224 · BioSample SAMN15454812
GENOME-RESOLVED EVIDENCE
GCA_013781885.1
Clostridium intestinale · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4796776 bp · GC 30.500%
Completeness 99.380% · contamination 1.550%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 2 |
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCHZF06_09300 | QLY81761.1 | OG0000061 | CP059378.1:1921887–1923233 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium intestinale] |
| ldhHZF06_00895 | QLY80177.1 | OG0000131 | CP059378.1:190718–191668 + | L-lactate dehydrogenase [Clostridium intestinale] |
| ldhHZF06_09050 | QLY81712.1 | OG0000131 | CP059378.1:1866413–1867363 + | L-lactate dehydrogenase [Clostridium intestinale] |
| ldhHZF06_12965 | QLY78010.1 | OG0000131 | CP059378.1:2585577–2586566 - | L-lactate dehydrogenase [Clostridium intestinale] |
| accBHZF06_09290 | QLY81759.1 | OG0000212 | CP059378.1:1920978–1921454 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium intestinale] |
| hbdHZF06_20375 | QLY79372.1 | OG0000229 | CP059378.1:4062708–4063556 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium intestinale] |
| thlHZF06_18295 | QLY79014.1 | OG0000234 | CP059378.1:3662164–3663342 - | acetyl-CoA C-acetyltransferase [Clostridium intestinale] |
| thlHZF06_19525 | QLY79235.1 | OG0000234 | CP059378.1:3911051–3912232 - | acetyl-CoA C-acetyltransferase [Clostridium intestinale] |
| fabZHZF06_09295 | QLY81760.1 | OG0000785 | CP059378.1:1921456–1921878 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium intestinale] |
| adhEHZF06_01645 | QLY80315.1 | OG0001124 | CP059378.1:341325–343958 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium intestinale] |
| adhEHZF06_05335 | QLY81013.1 | OG0001124 | CP059378.1:1145492–1148083 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium intestinale] |
| lctPHZF06_09770 | QLY81849.1 | OG0001228 | CP059378.1:2004519–2006060 + | L-lactate permease [Clostridium intestinale] |
| lctPHZF06_19095 | QLY79164.1 | OG0001228 | CP059378.1:3840405–3841928 - | L-lactate permease [Clostridium intestinale] |
| crtHZF06_20395 | QLY79376.1 | OG0001394 | CP059378.1:4066641–4067423 - | short-chain-enoyl-CoA hydratase [Clostridium intestinale] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.