Assembly
ASM1413179v1
BioProject PRJNA544389 · BioSample SAMN11835364
GENOME-RESOLVED EVIDENCE
GCA_014131795.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4705596 bp · GC 28.500%
Completeness 96.970% · contamination 2.770%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCFF104_05165 | QMW90361.1 | OG0000061 | CP040626.1:1218555–1219907 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCFF104_13375 | QMW91928.1 | OG0000061 | CP040626.1:2950702–2952048 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhFF104_03185 | QMW89984.1 | OG0000131 | CP040626.1:763686–764624 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhFF104_04815 | QMW90292.1 | OG0000131 | CP040626.1:1141025–1141978 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhFF104_07715 | QMW90850.1 | OG0000131 | CP040626.1:1779842–1780795 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhFF104_20835 | QMW93344.1 | OG0000131 | CP040627.1:659947–660891 - | L-lactate dehydrogenase [Clostridium butyricum] |
| accBFF104_05155 | QMW90359.1 | OG0000212 | CP040626.1:1217608–1218114 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| accBFF104_13380 | QMW91929.1 | OG0000212 | CP040626.1:2952091–2952552 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| hbdFF104_16180 | QMW92428.1 | OG0000229 | CP040626.1:3551121–3551969 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlFF104_15570 | QMW92341.1 | OG0000234 | CP040626.1:3436806–3437987 - | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZFF104_05160 | QMW90360.1 | OG0000785 | CP040626.1:1218118–1218546 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEFF104_00685 | QMW89519.1 | OG0001124 | CP040626.1:138594–141224 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPFF104_07250 | QMW90762.1 | OG0001228 | CP040626.1:1665216–1666757 + | L-lactate permease [Clostridium butyricum] |
| crtFF104_16200 | QMW92432.1 | OG0001394 | CP040626.1:3555185–3555970 - | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.