Assembly
ASM1417011v1
BioProject PRJNA599092 · BioSample SAMN13738780
GENOME-RESOLVED EVIDENCE
GCA_014170115.1
Clostridium tyrobutyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3086463 bp · GC 31.000%
Completeness 98.140% · contamination 0.780%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCGTH52_05665 | QNB66406.1 | OG0000061 | CP047467.1:1145707–1147050 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tyrobutyricum] |
| accCGTH52_12425 | QNB67636.1 | OG0000061 | CP047467.1:2509428–2510780 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tyrobutyricum] |
| fabZGTH52_00185 | QNB65383.1 | OG0000119 | CP047467.1:29536–31221 + | 3-hydroxyacyl-ACP dehydratase [Clostridium tyrobutyricum] |
| ldhGTH52_06605 | QNB66581.1 | OG0000131 | CP047467.1:1347574–1348521 + | L-lactate dehydrogenase [Clostridium tyrobutyricum] |
| ldhGTH52_08380 | QNB66912.1 | OG0000131 | CP047467.1:1691645–1692616 - | L-lactate dehydrogenase [Clostridium tyrobutyricum] |
| accBGTH52_12415 | QNB67634.1 | OG0000212 | CP047467.1:2508435–2508932 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium tyrobutyricum] |
| hbdGTH52_14310 | QNB67976.1 | OG0000229 | CP047467.1:2901084–2901932 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tyrobutyricum] |
| fabZGTH52_12420 | QNB67635.1 | OG0000785 | CP047467.1:2508944–2509393 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium tyrobutyricum] |
| lctPGTH52_04705 | QNB66227.1 | OG0001228 | CP047467.1:946571–948097 + | L-lactate permease [Clostridium tyrobutyricum] |
| crtGTH52_14290 | QNB67972.1 | OG0001394 | CP047467.1:2897262–2898041 + | short-chain-enoyl-CoA hydratase [Clostridium tyrobutyricum] |
| crtGTH52_13475 | QNB67819.1 | OG0001639 | CP047467.1:2704951–2705727 + | short-chain-enoyl-CoA hydratase [Clostridium tyrobutyricum] |
| crtGTH52_04265 | QNB66148.1 | OG0003747 | CP047467.1:844736–845158 + | enoyl-CoA hydratase [Clostridium tyrobutyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.