Assembly
ASM1430395v1
BioProject PRJNA615378 · BioSample SAMN14452107
GENOME-RESOLVED EVIDENCE
GCA_014303955.1
Caproicibacter fermentans · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3947358 bp · GC 51.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_139104041.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 381.500 / 0.96300 | Bridge orthogroup OG0001120 |
| accBWP_207645026.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 148.200 / 0.98100 | Annotation: gene_symbol |
| accCWP_066644397.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 653.700 / 0.98900 | Annotation: gene_symbol |
| accDWP_066644399.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 375.300 / 0.90100 | Bridge orthogroup OG0000844 |
| bcdWP_066643675.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 581.500 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| crtWP_066644230.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 340.200 / 0.96500 | Bridge orthogroup OG0002531 |
| etfAWP_187035899.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 422.600 / 0.97900 | Bridge orthogroup OG0001385 |
| etfBWP_187036699.1 · electron transfer flavoprotein subunit beta | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 355.500 / 0.99600 | Annotation: gene_symbol |
| etfBWP_066643666.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 338.000 / 1.00000 | Bridge orthogroup OG0001139 |
| fabFWP_187036330.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 551.900 / 0.98800 | Annotation: gene_symbol |
| fabGWP_066644387.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 249.500 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_066644382.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 470.300 / 0.99400 | Annotation: gene_symbol |
| fabZWP_187036332.1 · 3-hydroxyacyl-ACP dehydratase FabZ family protein | High | Approved candidatestrong profile and bridge orthogroup support | 99.100 / 0.74900 | Bridge orthogroup OG0000074 |
| lctPWP_187035901.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 615.000 / 0.98400 | Bridge orthogroup OG0000731 |
| rnfAWP_066643091.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 237.500 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_066643088.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 278.700 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfCWP_187035865.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 325.400 / 0.74400 | Bridge orthogroup OG0001114 |
| rnfDWP_066643099.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 371.600 / 0.94400 | Bridge orthogroup OG0001182 |
| rnfEWP_066643093.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 264.900 / 0.92300 | Bridge orthogroup OG0001153 |
| rnfGWP_066643096.1 · FMN-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 148.700 / 0.92300 | Bridge orthogroup OG0001292 |
| accBWP_066644084.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 83.600 / 0.55600 | Bridge orthogroup OG0000034 |
| bcdWP_066644041.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 619.700 / 0.99500 | Profile only |
| bcdWP_187036418.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 567.800 / 0.99700 | Profile only |
| bcdWP_187036701.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 498.700 / 0.98900 | Profile only |
| crtWP_187034555.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 150.200 / 0.98800 | Annotation: specific_product_name |
| etfAWP_066644043.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 436.700 / 0.98800 | Profile only |
| etfAWP_066644750.1 · electron transfer flavoprotein subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 436.700 / 0.97900 | Profile only |
| etfBWP_066644042.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 351.900 / 0.99600 | Profile only |
| fabGWP_187034599.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 233.500 / 0.96800 | Profile only |
| fabGWP_066646907.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.200 / 0.98000 | Profile only |
| fabGWP_187036569.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 196.000 / 0.98000 | Profile only |
| fabGWP_228725181.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.000 / 0.98800 | Profile only |
| fabGWP_407926834.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 180.400 / 0.98400 | Profile only |
| fabGWP_066648000.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.400 / 0.98400 | Profile only |
| fabGWP_156989647.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 125.600 / 0.97600 | Bridge orthogroup OG0000008 |
| fabGWP_066642684.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 114.000 / 0.76200 | Bridge orthogroup OG0000242 |
| fabHWP_187036326.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 261.400 / 0.98500 | Profile only |
| fabKWP_066644389.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 189.200 / 0.94600 | Profile only |
| fabLWP_066644387.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 212.300 / 0.97200 | Profile only |
| fabLWP_187034599.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.100 / 0.96000 | Profile only |
| fabLWP_228725181.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.400 / 0.97200 | Profile only |
| fabLWP_407926834.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.100 / 0.97200 | Profile only |
| fabLWP_066646907.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.100 / 0.98000 | Profile only |
| fabLWP_187036569.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.000 / 0.97200 | Profile only |
| fabLWP_066648000.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 161.000 / 0.97600 | Profile only |
| fabLWP_156989647.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 146.100 / 0.98800 | Profile only |
| hbdWP_066644040.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 397.400 / 0.98200 | Profile only |
| ldhWP_066644949.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 417.900 / 0.98100 | Profile only |
| ldhWP_156991065.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 371.600 / 0.97500 | Profile only |
| thlWP_187035847.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 601.500 / 0.99500 | Profile only |
| thlWP_066644039.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 585.400 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.