Assembly
ASM1446705v1
BioProject PRJNA656405 · BioSample SAMN15783688
GENOME-RESOLVED EVIDENCE
GCA_014467055.1
Caproicibacterium amylolyticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2996201 bp · GC 48.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_212508416.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 351.700 / 0.96000 | Bridge orthogroup OG0001120 |
| accBWP_212508420.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 148.100 / 0.98100 | Annotation: gene_symbol |
| accCWP_212508418.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 657.500 / 0.99300 | Annotation: gene_symbol |
| accDWP_212508417.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 394.400 / 0.90100 | Bridge orthogroup OG0000844 |
| crtWP_212508231.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 326.300 / 0.96500 | Bridge orthogroup OG0002531 |
| fabFWP_212508421.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 554.200 / 0.99300 | Annotation: gene_symbol |
| fabGWP_212508422.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 243.400 / 0.98800 | Bridge orthogroup OG0000008 |
| fabKWP_212508424.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 478.100 / 0.99700 | Annotation: gene_symbol |
| rnfBWP_246419489.1 · RnfABCDGE type electron transport complex subunit A | High | Approved candidatestrong profile and bridge orthogroup support | 242.800 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_212507777.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 331.500 / 0.73900 | Bridge orthogroup OG0001114 |
| rnfDWP_212507776.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 365.700 / 0.93500 | Bridge orthogroup OG0001182 |
| rnfEWP_212507774.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 267.300 / 0.93300 | Bridge orthogroup OG0001153 |
| rnfGWP_212507775.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 139.500 / 0.90700 | Bridge orthogroup OG0001292 |
| fabZWP_212507925.1 · acyl-CoA dehydratase activase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 71.900 / 0.93400 | Profile only |
| accBWP_212508300.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 82.500 / 0.53700 | Bridge orthogroup OG0000034 |
| bcdWP_212508233.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 606.000 / 0.99200 | Profile only |
| etfAWP_212508235.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 450.400 / 0.98800 | Profile only |
| etfBWP_212508234.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 353.000 / 1.00000 | Profile only |
| fabGWP_212507275.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 218.400 / 0.97200 | Profile only |
| fabGWP_212508509.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 207.200 / 0.99200 | Profile only |
| fabGWP_212507264.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 95.700 / 0.82700 | Bridge orthogroup OG0000242 |
| fabHWP_212508426.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 237.400 / 0.98500 | Profile only |
| fabHWP_246419188.1 · 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 206.300 / 0.98500 | Profile only |
| fabLWP_212508422.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.500 / 0.98400 | Profile only |
| fabLWP_212507275.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.700 / 0.96000 | Profile only |
| fabLWP_212508509.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.700 / 0.98400 | Profile only |
| fabZWP_212508419.1 · 3-hydroxyacyl-ACP dehydratase FabZ family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 79.700 / 0.74900 | Bridge orthogroup OG0000074 |
| hbdWP_212508232.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 418.500 / 0.98200 | Profile only |
| ldhWP_212506159.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 415.900 / 0.98400 | Profile only |
| ldhWP_212506726.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 355.600 / 0.98400 | Profile only |
| rnfAWP_246419489.1 · RnfABCDGE type electron transport complex subunit A | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 231.600 / 0.99500 | Profile only |
| thlWP_212508230.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 596.700 / 0.99500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.