Assembly
ASM1493156v1
BioProject PRJNA668535 · BioSample SAMN16414712
GENOME-RESOLVED EVIDENCE
GCA_014931565.1
Clostridium sp. 'deep sea' · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3831732 bp · GC 32.000%
Completeness 92.030% · contamination 1.390%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| hbdIMX26_15245 | QOR37023.1 | OG0000229 | CP063353.1:3275298–3276140 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. 'deep sea'] |
| thlIMX26_15260 | QOR34799.1 | OG0000234 | CP063353.1:3277587–3278765 + | acetyl-CoA C-acetyltransferase [Clostridium sp. 'deep sea'] |
| crtIMX26_06685 | QOR36490.1 | OG0000330 | CP063353.1:1426670–1427569 - | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase [Clostridium sp. 'deep sea'] |
| fabZIMX26_14305 | QOR34631.1 | OG0000785 | CP063353.1:3072900–3073325 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. 'deep sea'] |
| rnfAIMX26_04390 | QOR36058.1 | OG0001328 | CP063353.1:929582–930160 - | electron transport complex protein RnfA [Clostridium sp. 'deep sea'] |
| crtIMX26_15240 | QOR34796.1 | OG0001639 | CP063353.1:3274439–3275218 + | enoyl-CoA hydratase/isomerase family protein [Clostridium sp. 'deep sea'] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.