Assembly
ASM1602667v1
BioProject PRJNA231221 · BioSample SAMN13450461
GENOME-RESOLVED EVIDENCE
GCA_016026675.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3375486 bp · GC 28.500%
Completeness 97.030% · contamination 3.130%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCI6G88_00030 | QPR51421.1 | OG0000061 | CP065632.1:2777–4129 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhI6G88_05730 | QPR52502.1 | OG0000131 | CP065632.1:1337183–1338136 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBI6G88_00040 | QPR51423.1 | OG0000212 | CP065632.1:4563–5054 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdI6G88_08520 | QPR50164.1 | OG0000229 | CP065632.1:1902923–1903771 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlI6G88_09250 | QPR50279.1 | OG0000234 | CP065632.1:2039273–2040451 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZI6G88_00035 | QPR51422.1 | OG0000785 | CP065632.1:4141–4560 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEI6G88_07220 | QPR52757.1 | OG0001124 | CP065632.1:1643405–1646002 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPI6G88_04680 | QPR52311.1 | OG0001228 | CP065632.1:1089707–1091230 - | L-lactate permease [Clostridium perfringens] |
| rnfAI6G88_00080 | QPR51431.1 | OG0001328 | CP065632.1:11409–11984 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtI6G88_08500 | QPR50160.1 | OG0001394 | CP065632.1:1899014–1899796 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtI6G88_05770 | QPR52510.1 | OG0001639 | CP065632.1:1348017–1348793 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.