Assembly
ASM1602699v1
BioProject PRJNA231221 · BioSample SAMN13450435
GENOME-RESOLVED EVIDENCE
GCA_016026995.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3347523 bp · GC 28.500%
Completeness 97.160% · contamination 3.490%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCI6G62_11720 | QPS24224.1 | OG0000061 | CP065675.1:2566280–2567632 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhI6G62_05560 | QPS25828.1 | OG0000131 | CP065675.1:1150572–1151525 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBI6G62_11710 | QPS24222.1 | OG0000212 | CP065675.1:2565355–2565846 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdI6G62_02805 | QPS25353.1 | OG0000229 | CP065675.1:587508–588356 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlI6G62_02195 | QPS25258.1 | OG0000234 | CP065675.1:470051–471229 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZI6G62_11715 | QPS24223.1 | OG0000785 | CP065675.1:2565849–2566268 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEI6G62_04190 | QPS25598.1 | OG0001124 | CP065675.1:863706–866303 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPI6G62_06575 | QPS26011.1 | OG0001228 | CP065675.1:1386366–1387889 + | L-lactate permease [Clostridium perfringens] |
| rnfAI6G62_11670 | QPS24214.1 | OG0001328 | CP065675.1:2558714–2559289 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtI6G62_02825 | QPS25357.1 | OG0001394 | CP065675.1:591483–592265 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtI6G62_05520 | QPS25820.1 | OG0001639 | CP065675.1:1139914–1140690 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| fabGI6G62_10855 | QPS24054.1 | OG0002940 | CP065675.1:2380440–2381201 + | 3-oxoacyl-ACP reductase FabG [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.