Assembly
ASM1602737v1
BioProject PRJNA231221 · BioSample SAMN13450433
GENOME-RESOLVED EVIDENCE
GCA_016027375.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3355233 bp · GC 28.500%
Completeness 96.420% · contamination 3.850%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCI6G60_09835 | QPS29662.1 | OG0000061 | CP065681.1:2070871–2072223 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhI6G60_00970 | QPS30819.1 | OG0000131 | CP065681.1:168827–169780 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBI6G60_09845 | QPS29664.1 | OG0000212 | CP065681.1:2072657–2073148 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdI6G60_03715 | QPS31293.1 | OG0000229 | CP065681.1:731169–732017 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlI6G60_04325 | QPS31388.1 | OG0000234 | CP065681.1:850196–851374 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZI6G60_09840 | QPS29663.1 | OG0000785 | CP065681.1:2072235–2072654 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEI6G60_02340 | QPS31050.1 | OG0001124 | CP065681.1:454191–456788 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPI6G60_14910 | QPS30635.1 | OG0001228 | CP065681.1:3230481–3232004 - | L-lactate permease [Clostridium perfringens] |
| rnfAI6G60_09885 | QPS29672.1 | OG0001328 | CP065681.1:2079214–2079789 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtI6G60_03695 | QPS31289.1 | OG0001394 | CP065681.1:727260–728042 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtI6G60_01010 | QPS30827.1 | OG0001639 | CP065681.1:179662–180438 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.