Assembly
ASM1607137v1
BioProject PRJNA666195 · BioSample SAMN16288620
GENOME-RESOLVED EVIDENCE
GCA_016071375.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2702994 bp · GC 27.500%
Completeness 99.930% · contamination 2.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCIRP62_10840 | QPW53130.1 | OG0000061 | CP063816.1:2255533–2256876 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| ldhIRP62_02485 | QPW53593.1 | OG0000131 | CP063816.1:508458–509405 - | L-lactate dehydrogenase [Clostridium botulinum] |
| ldhIRP62_08565 | QPW52718.1 | OG0000131 | CP063816.1:1781347–1782297 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBIRP62_10850 | QPW53132.1 | OG0000212 | CP063816.1:2257327–2257803 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| hbdIRP62_01055 | QPW53342.1 | OG0000229 | CP063816.1:209828–210673 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| hbdIRP62_01625 | QPW53450.1 | OG0000229 | CP063816.1:317128–317976 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlIRP62_01060 | QPW53343.1 | OG0000234 | CP063816.1:210728–211906 + | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| fabZIRP62_10845 | QPW53131.1 | OG0000785 | CP063816.1:2256886–2257314 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium botulinum] |
| lctPIRP62_07790 | QPW52572.1 | OG0001228 | CP063816.1:1597515–1599038 - | L-lactate permease [Clostridium botulinum] |
| crtIRP62_01605 | QPW53446.1 | OG0001394 | CP063816.1:313249–314034 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtIRP62_04075 | QPW53881.1 | OG0001394 | CP063816.1:851747–852532 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.