Assembly
ASM1607155v1
BioProject PRJNA666195 · BioSample SAMN16288619
GENOME-RESOLVED EVIDENCE
GCA_016071555.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2565702 bp · GC 27.500%
Completeness 86.390% · contamination 0.190%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCIRP61_10285 | QPW55475.1 | OG0000061 | CP063822.1:2154910–2156253 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| ldhIRP61_07485 | QPW55057.1 | OG0000131 | CP063822.1:1584257–1585204 + | L-lactate dehydrogenase [Clostridium botulinum] |
| accBIRP61_10295 | QPW55477.1 | OG0000212 | CP063822.1:2156704–2157180 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| hbdIRP61_08460 | QPW55193.1 | OG0000229 | CP063822.1:1789754–1790602 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| fabZIRP61_10290 | QPW55476.1 | OG0000785 | CP063822.1:2156263–2156691 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium botulinum] |
| lctPIRP61_02645 | QPW55925.1 | OG0001228 | CP063822.1:574295–575818 + | L-lactate permease [Clostridium botulinum] |
| crtIRP61_05920 | QPW56369.1 | OG0001394 | CP063822.1:1253869–1254636 - | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtIRP61_08480 | QPW55197.1 | OG0001394 | CP063822.1:1793696–1794481 - | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtIRP61_07370 | QPW55037.1 | OG0015352 | CP063822.1:1558946–1559722 - | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.