Assembly
ASM1708446v1
BioProject PRJNA702506 · BioSample SAMN17963888
GENOME-RESOLVED EVIDENCE
GCA_017084465.1
Lacrimispora xylanisolvens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5633035 bp · GC 41.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 4/6 | 0.667 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| adhEWP_277405335.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1523.300 / 0.99400 | Bridge orthogroup OG0002334 |
| coatWP_277408608.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 261.800 / 0.99500 | Annotation: specific_product_name |
| coatWP_277406739.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 244.300 / 0.96300 | Bridge orthogroup OG0004934 |
| coatWP_277406738.1 · CoA transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 110.200 / 0.69600 | Bridge orthogroup OG0000263 |
| coatWP_277408609.1 · CoA transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 94.700 / 0.70500 | Bridge orthogroup OG0000263 |
| etfAWP_277407419.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 467.400 / 0.96700 | Bridge orthogroup OG0002903 |
| etfBWP_277407418.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 390.500 / 1.00000 | Bridge orthogroup OG0002348 |
| etfBWP_277406266.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 362.900 / 0.99600 | Bridge orthogroup OG0001139 |
| etfBWP_277406507.1 · electron transfer flavoprotein subunit beta | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 358.300 / 1.00000 | Annotation: gene_symbol |
| fabDWP_277405378.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 325.400 / 0.96500 | Annotation: gene_symbol |
| hbdWP_277406733.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 221.400 / 0.98600 | Bridge orthogroup OG0000153 |
| rnfAWP_170821694.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 274.300 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_277407266.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 326.600 / 0.92500 | Bridge orthogroup OG0001404 |
| rnfDWP_170821697.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 322.300 / 0.93800 | Bridge orthogroup OG0001182 |
| rnfEWP_277407265.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 275.800 / 0.92300 | Bridge orthogroup OG0001153 |
| accBWP_349773218.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 129.900 / 0.53700 | Annotation: gene_symbol |
| crtWP_277409448.1 · enoyl-CoA hydratase/isomerase family protein | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 141.300 / 0.62200 | Annotation: specific_product_name |
| accBWP_277406822.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 71.700 / 0.53700 | Bridge orthogroup OG0000034 |
| accCWP_277405379.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 743.100 / 0.98900 | Profile only |
| bcdWP_277406729.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 581.000 / 0.99700 | Profile only |
| bcdWP_277406506.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 500.600 / 0.98900 | Profile only |
| bcdWP_277406267.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 484.700 / 0.99500 | Profile only |
| bcdWP_277406269.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 434.700 / 0.99700 | Profile only |
| crtWP_277409446.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.700 / 0.99200 | Annotation: specific_product_name |
| etfBWP_277406730.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 314.800 / 1.00000 | Profile only |
| fabGWP_104434518.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 241.100 / 0.97600 | Profile only |
| fabGWP_277408580.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 204.600 / 0.98400 | Profile only |
| fabGWP_277409575.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 197.800 / 0.97600 | Profile only |
| fabGWP_277408618.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.400 / 0.98400 | Profile only |
| fabGWP_277407812.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.100 / 0.96800 | Profile only |
| fabGWP_277408526.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 180.700 / 0.97600 | Profile only |
| fabGWP_277407467.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.400 / 0.98800 | Profile only |
| fabGWP_277408468.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 158.900 / 0.99200 | Profile only |
| fabGWP_277406735.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 156.800 / 0.97600 | Profile only |
| fabGWP_434084687.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 151.000 / 0.94400 | Profile only |
| fabGWP_277406125.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 135.000 / 0.77000 | Bridge orthogroup OG0000242 |
| fabGWP_104436192.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 91.900 / 0.77000 | Bridge orthogroup OG0000242 |
| fabHWP_277405377.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 298.400 / 0.98800 | Profile only |
| fabKWP_277408456.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 325.500 / 0.98400 | Profile only |
| fabLWP_104434518.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 205.600 / 0.98000 | Profile only |
| fabLWP_277409575.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.000 / 0.98000 | Profile only |
| fabLWP_277408580.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.700 / 0.97200 | Profile only |
| fabLWP_277407467.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.500 / 0.98400 | Profile only |
| fabLWP_277408526.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.300 / 0.98800 | Profile only |
| fabLWP_277408618.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 155.000 / 0.97200 | Profile only |
| fabLWP_277408468.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.700 / 0.97200 | Profile only |
| fabLWP_277406735.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 137.400 / 0.97200 | Profile only |
| fabLWP_434084687.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 123.800 / 0.94000 | Profile only |
| fabLWP_277407812.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 117.300 / 0.74200 | Profile only |
| fabLWP_277406125.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 113.900 / 0.87300 | Profile only |
| ldhWP_277406586.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 445.400 / 0.99100 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.