Assembly
ASM1710008v1
BioProject PRJNA666195 · BioSample SAMN16288618
GENOME-RESOLVED EVIDENCE
GCA_017100085.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3137507 bp · GC 28.500%
Completeness 99.790% · contamination 0.740%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCIG390_03065 | QPW61172.1 | OG0000061 | CP063965.1:635986–637335 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| accCIG390_13100 | QPW60610.1 | OG0000061 | CP063965.1:2789393–2790736 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| ldhIG390_03035 | QPW61167.1 | OG0000131 | CP063965.1:630303–631250 - | L-lactate dehydrogenase [Clostridium botulinum] |
| ldhIG390_10280 | QPW60105.1 | OG0000131 | CP063965.1:2182629–2183579 - | L-lactate dehydrogenase [Clostridium botulinum] |
| ldhIG390_10285 | QPW60106.1 | OG0000131 | CP063965.1:2184081–2185028 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBIG390_03060 | QPW61171.1 | OG0000212 | CP063965.1:635483–635959 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| accBIG390_13110 | QPW60612.1 | OG0000212 | CP063965.1:2791187–2791666 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| hbdIG390_01170 | QPW60852.1 | OG0000229 | CP063965.1:239020–239865 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| hbdIG390_01805 | QPW60973.1 | OG0000229 | CP063965.1:361639–362487 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlIG390_01175 | QPW60853.1 | OG0000234 | CP063965.1:239920–241098 + | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| thlIG390_01510 | QPW60919.1 | OG0000234 | CP063965.1:305032–306207 + | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| fabZIG390_13105 | QPW60611.1 | OG0000785 | CP063965.1:2790746–2791174 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium botulinum] |
| lctPIG390_09380 | QPW59935.1 | OG0001228 | CP063965.1:1955920–1957443 - | L-lactate permease [Clostridium botulinum] |
| crtIG390_01785 | QPW60969.1 | OG0001394 | CP063965.1:357760–358545 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtIG390_05075 | QPW61539.1 | OG0001394 | CP063965.1:1075378–1076163 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtIG390_03195 | QPW61197.1 | OG0015352 | CP063965.1:667842–668618 + | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.