Assembly
ASM1710165v1
BioProject PRJNA666195 · BioSample SAMN16288621
GENOME-RESOLVED EVIDENCE
GCA_017101655.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3301838 bp · GC 28.500%
Completeness 87.310% · contamination 0.630%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCIRP63_13495 | QPW57778.1 | OG0000061 | CP063959.1:2834119–2835462 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| ldhIRP63_03050 | QPW58279.1 | OG0000131 | CP063959.1:628581–629528 - | L-lactate dehydrogenase [Clostridium botulinum] |
| ldhIRP63_10565 | QPW57327.1 | OG0000131 | CP063959.1:2206805–2207752 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBIRP63_03075 | QPW58282.1 | OG0000212 | CP063959.1:633760–634236 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| accBIRP63_13505 | QPW57780.1 | OG0000212 | CP063959.1:2835913–2836392 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| hbdIRP63_01160 | QPW58001.1 | OG0000229 | CP063959.1:236389–237234 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| hbdIRP63_01845 | QPW58114.1 | OG0000229 | CP063959.1:365327–366175 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlIRP63_01165 | QPW58002.1 | OG0000234 | CP063959.1:237289–238467 + | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| thlIRP63_01540 | QPW58067.1 | OG0000234 | CP063959.1:307765–308940 + | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| fabZIRP63_13500 | QPW57779.1 | OG0000785 | CP063959.1:2835472–2835900 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium botulinum] |
| crtIRP63_01825 | QPW58110.1 | OG0001394 | CP063959.1:361448–362233 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtIRP63_05175 | QPW58630.1 | OG0001394 | CP063959.1:1092454–1093239 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtIRP63_03215 | QPW58306.1 | OG0015352 | CP063959.1:667300–668076 + | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.