Assembly
ASM1734889v1
BioProject PRJNA656431 · BioSample SAMN14501574
GENOME-RESOLVED EVIDENCE
GCA_017348895.1
Clostridium gasigenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4132257 bp · GC 29.000%
Completeness 97.520% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCJ1C67_17665 | QSW19337.1 | OG0000061 | CP071376.1:3772608–3773960 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium gasigenes] |
| ldhJ1C67_07015 | QSW20859.1 | OG0000131 | CP071376.1:1448536–1449486 + | L-lactate dehydrogenase [Clostridium gasigenes] |
| ldhJ1C67_13115 | QSW18484.1 | OG0000131 | CP071376.1:2812772–2813725 + | L-lactate dehydrogenase [Clostridium gasigenes] |
| accBJ1C67_17675 | QSW19339.1 | OG0000212 | CP071376.1:3774393–3774881 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium gasigenes] |
| hbdJ1C67_04145 | QSW20372.1 | OG0000229 | CP071376.1:848438–849286 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium gasigenes] |
| thlJ1C67_03535 | QSW20280.1 | OG0000234 | CP071376.1:727984–729168 - | acetyl-CoA C-acetyltransferase [Clostridium gasigenes] |
| fabZJ1C67_17670 | QSW19338.1 | OG0000785 | CP071376.1:3773969–3774391 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium gasigenes] |
| adhEJ1C67_17650 | QSW21514.1 | OG0001124 | CP071376.1:3767702–3770323 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium gasigenes] |
| rnfAJ1C67_17725 | QSW19349.1 | OG0001328 | CP071376.1:3782358–3782936 - | electron transport complex protein RnfA [Clostridium gasigenes] |
| crtJ1C67_04165 | QSW20376.1 | OG0001394 | CP071376.1:852603–853385 - | short-chain-enoyl-CoA hydratase [Clostridium gasigenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.