Assembly
ASM1813554v1
BioProject PRJNA721857 · BioSample SAMN18740316
GENOME-RESOLVED EVIDENCE
GCA_018135545.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3435257 bp · GC 28.500%
Completeness 98.520% · contamination 2.560%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKB552_06415 | QUD74329.1 | OG0000061 | CP073070.1:1480574–1481926 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKB552_00670 | QUD73236.1 | OG0000131 | CP073070.1:151355–152308 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKB552_06405 | QUD74327.1 | OG0000212 | CP073070.1:1479649–1480140 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKB552_12980 | QUD72762.1 | OG0000229 | CP073070.1:2900419–2901267 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKB552_12325 | QUD72660.1 | OG0000234 | CP073070.1:2775922–2777100 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKB552_06410 | QUD74328.1 | OG0000785 | CP073070.1:1480143–1480562 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKB552_14370 | QUD73007.1 | OG0001124 | CP073070.1:3176351–3178948 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKB552_01705 | QUD73422.1 | OG0001228 | CP073070.1:393716–395239 + | L-lactate permease [Clostridium perfringens] |
| rnfAKB552_06365 | QUD74319.1 | OG0001328 | CP073070.1:1473008–1473583 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtKB552_13000 | QUD72766.1 | OG0001394 | CP073070.1:2904394–2905176 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKB552_00630 | QUD73228.1 | OG0001639 | CP073070.1:140697–141473 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.