Assembly
ASM1814059v1
BioProject PRJNA722306 · BioSample SAMN18751770
GENOME-RESOLVED EVIDENCE
GCA_018140595.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6008343 bp · GC 30.000%
Completeness 97.260% · contamination 2.680%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 5 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKDJ94_05800 | QUF75241.1 | OG0000061 | CP073279.1:1287021–1288373 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| accCKDJ94_14550 | QUF71945.1 | OG0000061 | CP073279.1:3204836–3206179 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| ldhKDJ94_05490 | QUF75181.1 | OG0000131 | CP073279.1:1215507–1216457 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhKDJ94_14730 | QUF71978.1 | OG0000131 | CP073279.1:3241988–3242941 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhKDJ94_21375 | QUF73193.1 | OG0000131 | CP073279.1:4675979–4676929 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhKDJ94_25630 | QUF73996.1 | OG0000131 | CP073279.1:5747345–5748292 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| accBKDJ94_05790 | QUF75239.1 | OG0000212 | CP073279.1:1286059–1286574 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium beijerinckii] |
| hbdKDJ94_01805 | QUF74511.1 | OG0000229 | CP073279.1:391161–392009 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| thlKDJ94_02365 | QUF74598.1 | OG0000234 | CP073279.1:498842–500023 + | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| thlKDJ94_19075 | QUF72771.1 | OG0000234 | CP073279.1:4178644–4179822 - | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| fabZKDJ94_05795 | QUF75240.1 | OG0000785 | CP073279.1:1286578–1287006 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium beijerinckii] |
| adhEKDJ94_01705 | QUF74492.1 | OG0001124 | CP073279.1:363603–366197 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium beijerinckii] |
| lctPKDJ94_15225 | QUF72072.1 | OG0001228 | CP073279.1:3367880–3369415 - | L-lactate permease [Clostridium beijerinckii] |
| crtKDJ94_01785 | QUF74507.1 | OG0001394 | CP073279.1:387137–387922 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
| crtKDJ94_10790 | QUF76173.1 | OG0001394 | CP073279.1:2363710–2364495 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
| crtKDJ94_23770 | QUF73647.1 | OG0001639 | CP073279.1:5262725–5263501 - | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
| crtKDJ94_11805 | QUF76363.1 | OG0008680 | CP073279.1:2595109–2595939 + | enoyl-CoA hydratase/isomerase family protein [Clostridium beijerinckii] |
| crtKDJ94_11810 | QUF76364.1 | OG0008680 | CP073279.1:2596082–2596918 + | enoyl-CoA hydratase/isomerase family protein [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.