Assembly
ASM1814065v1
BioProject PRJNA722306 · BioSample SAMN18751771
GENOME-RESOLVED EVIDENCE
GCA_018140655.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4488390 bp · GC 29.000%
Completeness 94.470% · contamination 2.750%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKDJ93_04710 | QUF84205.1 | OG0000061 | CP073277.1:992458–993825 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCKDJ93_12220 | QUF82493.1 | OG0000061 | CP073277.1:2615539–2616891 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhKDJ93_09815 | QUF82033.1 | OG0000131 | CP073277.1:2067669–2068622 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhKDJ93_12575 | QUF82561.1 | OG0000131 | CP073277.1:2693412–2694365 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhKDJ93_13705 | QUF82776.1 | OG0000131 | CP073277.1:2971517–2972455 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhKDJ93_19230 | QUF85196.1 | OG0000131 | CP073278.1:484473–485417 + | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBKDJ93_04705 | QUF84204.1 | OG0000212 | CP073277.1:991957–992415 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| accBKDJ93_12230 | QUF82495.1 | OG0000212 | CP073277.1:2617332–2617838 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdKDJ93_01890 | QUF83709.1 | OG0000229 | CP073277.1:395730–396578 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlKDJ93_02485 | QUF83795.1 | OG0000234 | CP073277.1:505881–507062 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZKDJ93_12225 | QUF82494.1 | OG0000785 | CP073277.1:2616900–2617328 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEKDJ93_16435 | QUF83266.1 | OG0001124 | CP073277.1:3641969–3644599 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPKDJ93_10325 | QUF82130.1 | OG0001228 | CP073277.1:2197604–2199145 - | L-lactate permease [Clostridium butyricum] |
| crtKDJ93_01870 | QUF83705.1 | OG0001394 | CP073277.1:391729–392514 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.