Assembly
ASM1822362v1
BioProject PRJNA723961 · BioSample SAMN18838140
GENOME-RESOLVED EVIDENCE
GCA_018223625.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3035113 bp · GC 31.500%
Completeness 87.710% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKEC48_00580 | QUN13067.1 | OG0000061 | CP073631.1:112716–114083 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. C1] |
| ldhKEC48_01640 | QUN13255.1 | OG0000131 | CP073631.1:327813–328766 - | L-lactate dehydrogenase [Clostridium sp. C1] |
| ldhKEC48_06755 | QUN14198.1 | OG0000131 | CP073631.1:1248388–1249332 - | L-lactate dehydrogenase [Clostridium sp. C1] |
| accBKEC48_00575 | QUN13066.1 | OG0000212 | CP073631.1:112296–112706 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. C1] |
| fabZKEC48_00625 | QUN13076.1 | OG0000785 | CP073631.1:121723–122154 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. C1] |
| adhEKEC48_14110 | QUN12589.1 | OG0022092 | CP073631.1:2642318–2644993 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. C1] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.