Assembly
ASM1822374v1
BioProject PRJNA724001 · BioSample SAMN18839070
GENOME-RESOLVED EVIDENCE
GCA_018223745.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5950247 bp · GC 30.000%
Completeness 91.900% · contamination 6.460%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKEC93_05785 | QUN36331.1 | OG0000061 | CP073653.1:1263453–1264805 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| accCKEC93_14015 | QUN33116.1 | OG0000061 | CP073653.1:3097273–3098616 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| ldhKEC93_05450 | QUN36266.1 | OG0000131 | CP073653.1:1187142–1188092 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhKEC93_14195 | QUN33149.1 | OG0000131 | CP073653.1:3136165–3137118 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhKEC93_20390 | QUN34270.1 | OG0000131 | CP073653.1:4496849–4497799 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhKEC93_24700 | QUN35073.1 | OG0000131 | CP073653.1:5587232–5588158 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| accBKEC93_05775 | QUN36329.1 | OG0000212 | CP073653.1:1262491–1263006 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium beijerinckii] |
| hbdKEC93_01725 | QUN35597.1 | OG0000229 | CP073653.1:359877–360725 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| thlKEC93_02325 | QUN35692.1 | OG0000234 | CP073653.1:475455–476636 + | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| thlKEC93_18355 | QUN33892.1 | OG0000234 | CP073653.1:4043771–4044949 - | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| fabZKEC93_05780 | QUN36330.1 | OG0000785 | CP073653.1:1263010–1263438 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium beijerinckii] |
| adhEKEC93_01520 | QUN35558.1 | OG0001124 | CP073653.1:313076–315658 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium beijerinckii] |
| lctPKEC93_14695 | QUN33243.1 | OG0001228 | CP073653.1:3275997–3277532 - | L-lactate permease [Clostridium beijerinckii] |
| crtKEC93_01705 | QUN35593.1 | OG0001394 | CP073653.1:355853–356638 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
| crtKEC93_10395 | QUN37187.1 | OG0001394 | CP073653.1:2275844–2276629 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
| crtKEC93_22750 | QUN34708.1 | OG0001639 | CP073653.1:5069560–5070336 - | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.