Assembly
ASM1905655v1
BioProject PRJNA379340 · BioSample SAMN06605941
GENOME-RESOLVED EVIDENCE
GCA_019056555.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4614182 bp · GC 31.000%
Completeness 98.140% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfC | Rnf complex subunit C | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| rnfCB5S50_09220 | QXE19000.1 | OG0000037 | CP020473.1:2035619–2036947 - | electron transport complex protein RnfC [Clostridium sp. 001] |
| accCB5S50_10385 | QXE19203.1 | OG0000061 | CP020473.1:2259750–2261093 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. 001] |
| accBB5S50_00120 | QXE17377.1 | OG0000212 | CP020473.1:22502–22720 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium sp. 001] |
| accBB5S50_21075 | QXE21143.1 | OG0000212 | CP020473.1:4604662–4604880 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium sp. 001] |
| hbdB5S50_01755 | QXE17674.1 | OG0000229 | CP020473.1:404295–405233 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. 001] |
| hbdB5S50_07945 | QXE18762.1 | OG0000229 | CP020473.1:1760455–1761396 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. 001] |
| thlB5S50_01790 | QXE17680.1 | OG0000234 | CP020473.1:411870–413069 - | acetyl-CoA acetyltransferase [Clostridium sp. 001] |
| adhEB5S50_19185 | QXE20806.1 | OG0001124 | CP020473.1:4155996–4158608 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. 001] |
| adhEB5S50_19195 | QXE20808.1 | OG0001124 | CP020473.1:4160482–4163115 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. 001] |
| fabZB5S50_07255 | QXE18648.1 | OG0001208 | CP020473.1:1619003–1620262 - | 3-hydroxyacyl-ACP dehydratase [Clostridium sp. 001] |
| lctPB5S50_00720 | QXE17488.1 | OG0001228 | CP020473.1:155292–156818 - | lactate permease [Clostridium sp. 001] |
| fabGB5S50_03335 | QXE17957.1 | OG0001499 | CP020473.1:756241–756936 - | 3-oxoacyl-ACP reductase [Clostridium sp. 001] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.