Assembly
ASM1979782v1
BioProject PRJNA748141 · BioSample SAMN20308692
GENOME-RESOLVED EVIDENCE
GCA_019797825.1
Limosilactobacillus panis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2129075 bp · GC 47.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_222259941.1 · carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 311.200 / 0.95200 | Bridge orthogroup OG0001120 |
| accBWP_222257755.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 129.600 / 0.98800 | Profile only |
| accCWP_222257754.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 647.000 / 0.99300 | Annotation: gene_symbol |
| accDWP_222257753.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 363.200 / 0.93900 | Bridge orthogroup OG0000844 |
| adhEWP_261313291.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1053.000 / 0.98700 | Bridge orthogroup OG0002334 |
| fabFWP_222257756.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 525.400 / 0.98800 | Annotation: gene_symbol |
| fabGWP_222257757.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 236.100 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_222257752.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 340.000 / 0.97300 | Annotation: gene_symbol |
| fabZWP_047767588.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 167.800 / 0.75400 | Bridge orthogroup OG0000074 |
| fabZWP_222257762.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 128.300 / 0.76000 | Bridge orthogroup OG0000074 |
| thlWP_222258452.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 519.100 / 0.99500 | Bridge orthogroup OG0000010 |
| fabGWP_261313278.1 · SDR family NAD(P)-dependent oxidoreductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 83.800 / 0.64100 | Profile only |
| fabGWP_222257752.1 · enoyl-ACP reductase FabI | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 71.500 / 0.98000 | Profile only |
| accCWP_222257730.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 517.000 / 0.99100 | Profile only |
| crtWP_222258598.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 157.400 / 0.98800 | Profile only |
| fabGWP_222259563.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 161.600 / 0.87900 | Bridge orthogroup OG0000242 |
| fabHWP_222257760.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 277.700 / 0.99700 | Profile only |
| fabLWP_222257757.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.200 / 0.97600 | Profile only |
| fabLWP_222259563.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 141.300 / 0.87700 | Profile only |
| ldhWP_222259712.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 385.800 / 0.98100 | Profile only |
| ldhWP_222258077.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 332.600 / 0.98400 | Profile only |
| ldhWP_222258734.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 265.500 / 0.96800 | Profile only |
| ldhWP_047768775.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 255.300 / 0.96800 | Profile only |
| ldhWP_047769573.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 220.600 / 0.97200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.